G10K_VGP_Transcriptome_Sequencing

Identifiers: SRA: SRP184741
BioProject: PRJNA516733

Study Type: Other

Abstract: The Vertebrate Genomes Project aims to provide annotated reference genome sequences for all vertebrate species. This project contains transcriptome data from various sequencing platforms to support transcript and gene annotation of reference genomes generated by VGP. The raw data are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/about/data_use_policy.

Center Project: Various_Species

External Link: /pubmed:36344967

Related Files
Organism	Sample	File Name	Size	Updated
Phyllostomus discolor	SAMN10882473	Cerebellum_arrowed_hq.fastq	101.5Mb	2020-02-03 06:06:17
Strigops habroptila	SAMN11655656	H_kakapo_liver_ccs.fastq	874.9Mb	2019-08-07 12:00:36
Phyllostomus discolor	SAMN10882474	Hypothalamus_arrowed_hq.fastq	135.0Mb	2020-02-03 04:27:12
Taeniopygia guttata	SAMN10882185	SRR8551560_bam.tgz	25.8Gb	2019-02-08 15:56:43
Phyllostomus discolor	SAMN10882475	Striatum_arrowed_hq.fastq	137.8Mb	2020-02-03 04:51:47
Phyllostomus discolor	SAMN10882476	Testis_arrowed_hq.fastq	98.8Mb	2020-02-03 04:37:15
Taeniopygia guttata	SAMN10882188	all_arrowed_hq.fastq	131.2Mb	2019-10-10 16:36:48
Calypte anna	SAMN11890499	bCalAnn1_hq_isoforms.fastq	225.2Mb	2019-06-10 13:59:02
Catharus ustulatus	SAMN14650182	bCatUst1_hq_brain_transcripts.fastq	593.3Mb	2020-04-21 03:32:35
Catharus ustulatus	SAMN14650183	bCatUst1_hq_ovary_transcripts.fastq	484.0Mb	2020-04-21 03:30:50
Chiroxiphia lanceolata	SAMN11890674	bChiLan1_hq_brain_transcripts.fastq	78.1Mb	2019-12-16 17:26:40
Chiroxiphia lanceolata	SAMN11890675	bChiLan1_hq_kidney_transcripts.fastq	50.2Mb	2019-12-16 17:23:58
Chiroxiphia lanceolata	SAMN11890676	bChiLan1_hq_ovary_transcripts.fastq	59.5Mb	2019-12-16 17:09:54
Hirundo rustica	SAMN17517681	bHirRus1_hq_brain_transcripts.fastq	147.8Mb	2019-06-03 12:18:57
Hirundo rustica	SAMN17517682	bHirRus1_hq_ovary_transcripts.fastq	185.2Mb	2019-06-03 12:19:42
Cyclopterus lumpus	SAMN14650025	fCycLum1_hq_brain_transcripts.fastq	185.7Mb	2020-04-21 02:07:48
Cyclopterus lumpus	SAMN14650026	fCycLum1_hq_liver_transcripts.fastq	93.9Mb	2020-04-21 02:07:13
Cyclopterus lumpus	SAMN14650027	fCycLum1_hq_ovary_transcripts.fastq	155.8Mb	2020-04-21 02:07:39
Hippoglossus hippoglossus	SAMN11890677	fHipHip1_hq_brain_transcripts.fastq	120.1Mb	2019-06-25 14:51:23
Hippoglossus hippoglossus	SAMN11890678	fHipHip1_hq_testis_transcripts.fastq	171.0Mb	2019-06-25 14:51:34
Notolabrus celidotus	SAMN14643434	fNotCel1_hq_brain_transcripts.fastq	894.7Mb	2020-04-20 12:06:29
Notolabrus celidotus	SAMN14643435	fNotCel1_hq_testis_transcripts.fastq	478.3Mb	2020-04-20 12:04:35
Periophthalmus magnuspinnatus	SAMN14652321	fPerMag1_hq_brain_transcripts.fastq	141.8Mb	2020-04-21 10:16:50
Periophthalmus magnuspinnatus	SAMN14652322	fPerMag1_hq_gill_transcripts.fastq	190.1Mb	2020-04-21 10:17:02
Periophthalmus magnuspinnatus	SAMN14652323	fPerMag1_hq_liver_transcripts.fastq	121.5Mb	2020-04-21 10:16:41
Periophthalmus magnuspinnatus	SAMN14652324	fPerMag1_hq_muscle_transcripts.fastq	319.9Mb	2020-04-21 10:17:51
Periophthalmus magnuspinnatus	SAMN14652325	fPerMag1_hq_ovary_transcripts.fastq	151.6Mb	2020-04-21 10:17:26
Taeniopygia guttata	SAMN10882190	hq_isoforms.fastq	37.5Mb	2020-02-03 07:59:42
Taeniopygia guttata	SAMN10882189	hq_isoforms.fastq	35.0Mb	2020-02-03 08:19:51
Taeniopygia guttata	SAMN10882187	hq_isoforms.fastq	109.9Mb	2020-02-03 07:59:44
Taeniopygia guttata	SAMN10882189	m54158_171110_132110.subreads.bam	8.8Gb	2019-02-08 15:29:47
Taeniopygia guttata	SAMN10882190	m54158_171110_234101.subreads.bam	8.3Gb	2019-02-08 15:29:31
Phyllostomus discolor	SAMN10882473	m54158_180427_163623.subreads.bam	14.2Gb	2019-02-11 00:58:37
Taeniopygia guttata	SAMN10882187	m54159_180412_025747.subreads.bam	15.2Gb	2019-02-08 15:32:37
Taeniopygia guttata	SAMN10882188	m54159_180412_223625.subreads.bam	19.8Gb	2019-02-08 15:37:49
Phyllostomus discolor	SAMN10882476	m54159_180413_191554.subreads.bam	17.2Gb	2019-02-11 00:59:44
Phyllostomus discolor	SAMN10882475	m54159_180414_053856.subreads.bam	18.3Gb	2019-02-11 01:03:04
Phyllostomus discolor	SAMN10882474	m54159_180414_160141.subreads.bam	18.2Gb	2019-02-11 00:59:55
Arvicanthis niloticus	SAMN14649084	mArvNil1_hq_brain_transcripts.fastq	192.8Mb	2020-04-21 01:39:59
Arvicanthis niloticus	SAMN14649085	mArvNil1_hq_testis_transcripts.fastq	204.0Mb	2020-04-21 01:39:33
Balaenoptera musculus	SAMN12287136	mBalMus1_hq_fibroblasts_transcripts.fastq	104.0Mb	2019-06-25 14:53:17
Callithrix jacchus	SAMN14270725	mCalJac4_hq_brainstem_transcripts.fastq	273.9Mb	2020-03-03 18:05:13
Callithrix jacchus	SAMN14270726	mCalJac4_hq_cerebellum_transcripts.fastq	231.5Mb	2020-03-03 18:04:59
Callithrix jacchus	SAMN14270727	mCalJac4_hq_hippocampus_transcripts.fastq	380.2Mb	2020-03-03 18:05:22
Callithrix jacchus	SAMN14270728	mCalJac4_hq_lung_transcripts.fastq	301.8Mb	2020-03-03 18:05:21
Callithrix jacchus	SAMN14270729	mCalJac4_hq_motor_cortex_transcripts.fastq	300.9Mb	2020-03-03 18:05:13
Callithrix jacchus	SAMN14270730	mCalJac4_hq_striatum_transcripts.fastq	338.7Mb	2020-03-03 18:05:29
Callithrix jacchus	SAMN14270731	mCalJac4_hq_testes_transcripts.fastq	407.1Mb	2020-03-03 18:05:19
Callithrix jacchus	SAMN14270732	mCalJac4_hq_thalamus_transcripts.fastq	276.9Mb	2020-03-03 18:05:09
Lynx canadensis	SAMN11890501	mLynCan4_hq_muscle_transcripts.fastq	115.2Mb	2019-07-20 20:00:04
Phocoena sinus	SAMN12325353	mPhoSin1_hq_cells_transcripts.fastq	1.5Gb	2020-02-08 05:04:00
Trichosurus vulpecula	SAMN14122536	mTriVul1_hq_brain_transcripts.fastq	168.9Mb	2020-04-20 07:47:57
Trichosurus vulpecula	SAMN12629507	mTriVul1_hq_muscle_transcripts.fastq	170.2Mb	2020-04-20 07:47:50
Trichosurus vulpecula	SAMN14122537	mTriVul1_hq_testis_transcripts.fastq	151.9Mb	2020-04-20 07:47:28
Taeniopygia guttata	SAMN10882185	primer0.m54006_170729_232022.subreads.bam	6.5Gb	2020-02-05 07:18:30
Taeniopygia guttata	SAMN10882185	primer0.m54026_170727_103805.subreads.bam	5.5Gb	2020-02-05 07:18:30
Taeniopygia guttata	SAMN10882185	primer0.m54200_170721_210832.subreads.bam	6.9Gb	2020-02-05 11:59:36
Taeniopygia guttata	SAMN10882185	primer0.m54200_170722_173443.subreads.bam	6.8Gb	2020-02-05 03:19:34
Dermochelys coriacea	SAMN11890670	rDerCor1_hq_brain_transcripts.fastq	231.8Mb	2019-06-25 14:54:06
Dermochelys coriacea	SAMN11890671	rDerCor1_hq_lung_transcripts.fastq	195.5Mb	2019-06-25 14:53:25
Dermochelys coriacea	SAMN11890672	rDerCor1_hq_ovary_transcripts.fastq	386.0Mb	2019-06-25 14:54:13
Lacerta agilis	SAMN14650867	rLacAgi1_hq_brain_transcripts.fastq	569.8Mb	2020-04-21 03:53:31
Lacerta agilis	SAMN14650868	rLacAgi1_hq_ovary_transcripts.fastq	465.5Mb	2020-04-21 03:52:41
Lacerta agilis	SAMN14650869	rLacAgi2_hq_testis_transcripts.fastq	368.0Mb	2020-04-21 03:52:40
Amblyraja radiata	SAMN11890624	sAmbRad1_hq_testis_transcripts.fastq	106.0Mb	2019-06-03 12:18:34
Pristis pectinata	SAMN14649983	sPriPec2_hq_kidney_transcripts.fastq	205.5Mb	2020-04-21 01:53:12
Pristis pectinata	SAMN14649984	sPriPec2_hq_ovary_transcripts.fastq	173.2Mb	2020-04-21 01:52:54
Taeniopygia guttata	SAMN10882185	zfinch_hq_isoforms.fastq	245.4Mb	2020-02-03 04:06:14

Related SRA data

Experiments:: 175 ( 127 samples )

Runs:: 175 (2.3Tbp; 805.3Gb)

Additional objects:

File type	count
fastq	218
SRA Lite	174
pacbio_native	68
bam	1