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ASM2569848v1

  • Anomalous assembly.
Organism name:
Gossypium arboreum (tree cotton)
Isolate:
Shixiya-1
BioSample:
SAMN30903772
BioProject:
PRJNA788082
Submitter:
Huazhong Agricultural University
Date:
2022/10/17
Assembly level:
Chromosome
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_025698485.1 (replaced)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAOWAB01
Assembly method:
Canu v. 1.3
Expected final version:
yes
Genome coverage:
131.0x
Sequencing technology:
Oxford Nanopore; Illumina

IDs: 14146131 [UID] 36745148 [GenBank]

See Genome Information for Gossypium arboreum

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

In December 2022 2 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length1,621,030,562
Total ungapped length1,621,008,062
Gaps between scaffolds0
Number of scaffolds948
Scaffold N50129,592,444
Scaffold L506
Number of contigs1,173
Contig N5011,691,474
Contig L5040
Total number of chromosomes and plasmids13
Number of component sequences (WGS or clone)948

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_025701065.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM046930.1n/an/a0
Chromosome 2CM046931.1n/an/a0
Chromosome 3CM046932.1n/an/a0
Chromosome 4CM046933.1n/an/a0
Chromosome 5CM046934.1n/an/a0
Chromosome 6CM046935.1n/an/a0
Chromosome 7CM046936.1n/an/a0
Chromosome 8CM046937.1n/an/a0
Chromosome 9CM046938.1n/an/a0
Chromosome 10CM046939.1n/an/a0
Chromosome 11CM046940.1n/an/a0
Chromosome 12CM046941.1n/an/a0
Chromosome 13CM046942.1n/an/a0
unplacedn/an/an/a935

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,621,030,5629481,621,008,062129,592,4442250
Chromosome 1123,408,3371123,406,537123,408,337180
Chromosome 2115,147,0591115,144,659115,147,059240
Chromosome 3139,243,6081139,242,408139,243,608120
Chromosome 4122,505,7281122,503,728122,505,728200
Chromosome 593,157,762193,156,06293,157,762170
Chromosome 6143,367,6081143,365,008143,367,608260
Chromosome 7106,034,1341106,033,134106,034,134100
Chromosome 8142,302,2581142,300,558142,302,258170
Chromosome 989,399,126189,397,62689,399,126150
Chromosome 10131,761,1271131,759,727131,761,127140
Chromosome 11137,852,5001137,850,600137,852,500190
Chromosome 12119,979,0931119,977,893119,979,093120
Chromosome 13129,592,4441129,590,344129,592,444210
unplaced27,279,77893527,279,77863,18000