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Susie_PAB_v1

Organism name:
Pongo abelii (Sumatran orangutan)
Isolate:
Susie
Sex:
female
BioSample:
SAMN06275555
BioProject:
PRJNA369439
Submitter:
University of Washington
Date:
2018/01/17
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_002880775.2 (replaced)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
NDHI02
Assembly method:
Falcon v. (git hash: 91e700c4) Nov 2015
Expected final version:
no
Genome coverage:
101.2x
Sequencing technology:
PacBio

IDs: 1528571 [UID] 5903238 [GenBank]

See Genome Information for Pongo abelii

Pathogen Detection Resources

There are 8 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,064,174,601
Total ungapped length3,042,566,910
Gaps between scaffolds39
Number of scaffolds5,299
Scaffold N5098,444,179
Scaffold L5013
Number of contigs5,813
Contig N5011,072,147
Contig L5083
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)5,813

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_002880785.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM009262.1n/an/a2
Chromosome 2ACM009263.1n/an/a1
Chromosome 2BCM009264.1n/an/a0
Chromosome 3CM009265.1n/an/a1
Chromosome 4CM009266.1n/an/a1
Chromosome 5CM009267.1n/an/a0
Chromosome 6CM009268.1n/an/a1
Chromosome 7CM009269.1n/an/a3
Chromosome 8CM009270.1n/an/a1
Chromosome 9CM009271.1n/an/a0
Chromosome 10CM009272.1n/an/a0
Chromosome 11CM009273.1n/an/a8
Chromosome 12CM009274.1n/an/a0
Chromosome 13CM009275.1n/an/a0
Chromosome 14CM009276.1n/an/a4
Chromosome 15CM009277.1n/an/a0
Chromosome 16CM009278.1n/an/a5
Chromosome 17CM009279.1n/an/a5
Chromosome 18CM009280.1n/an/a0
Chromosome 19CM009281.1n/an/a0
Chromosome 20CM009282.1n/an/a4
Chromosome 21CM009283.1n/an/a1
Chromosome 22CM009284.1n/an/a0
Chromosome XCM009285.1n/an/a9
unplacedn/an/an/a5,190

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule3,064,174,6015,2993,042,566,91098,444,17951439
Chromosome 1AllAssembled moleculeUnlocalized scaffolds227,922,771227,849,98072,791422226,814,628226,741,83772,791125,219,174125,219,17436,61844440110
Chromosome 2AAllAssembled moleculeUnlocalized scaffolds109,545,023109,476,23368,790651107,926,995107,858,20568,790101,864,052101,864,05268,79025250440
Chromosome 2BAssembled molecule129,892,7321129,839,615129,892,732200
Chromosome 3AllAssembled moleculeUnlocalized scaffolds196,595,275193,596,1172,999,158321196,063,976193,405,5982,658,378154,428,787154,428,7872,999,15827243110
Chromosome 4AllAssembled moleculeUnlocalized scaffolds189,330,873189,315,25215,621541188,564,806188,549,18515,621123,536,559123,536,55915,62127270330
Chromosome 5Assembled molecule179,130,4892178,838,765132,046,499161
Chromosome 6AllAssembled moleculeUnlocalized scaffolds169,509,492169,450,32159,171321169,247,622169,188,45159,171110,828,064110,828,06459,17124240110
Chromosome 7AllAssembled moleculeUnlocalized scaffolds155,140,702145,365,1089,775,594523153,559,323143,824,2799,735,044128,499,671128,499,6715,964,97435287110
Chromosome 8AllAssembled moleculeUnlocalized scaffolds144,007,930143,988,89919,031431143,205,913143,186,88219,03143,342,85943,342,85919,03118180220
Chromosome 9Assembled molecule112,173,0972111,860,964112,109,031101
Chromosome 10Assembled molecule132,137,0905131,695,32787,880,155284
Chromosome 11AllAssembled moleculeUnlocalized scaffolds128,649,997128,088,801561,196918128,015,502127,454,306561,196128,088,801128,088,801404,13221210000
Chromosome 12Assembled molecule132,145,5012131,822,932130,888,938151
Chromosome 13Assembled molecule98,444,179196,900,76598,444,179160
Chromosome 14AllAssembled moleculeUnlocalized scaffolds89,153,69788,937,903215,79451488,977,44188,761,647215,79488,937,90388,937,903116,63212120000
Chromosome 15Assembled molecule82,525,808179,873,78082,525,808240
Chromosome 16AllAssembled moleculeUnlocalized scaffolds77,722,55568,222,6599,499,896105576,350,74367,427,1918,923,55246,153,46546,153,4657,154,81928199440
Chromosome 17AllAssembled moleculeUnlocalized scaffolds79,452,11475,897,2183,554,89694577,193,97674,119,9043,074,07244,935,94144,935,9413,194,79419145330
Chromosome 18Assembled molecule75,898,111175,218,48275,898,11190
Chromosome 19Assembled molecule57,560,979356,780,50922,479,955312
Chromosome 20AllAssembled moleculeUnlocalized scaffolds61,034,27360,826,850207,42373460,266,62860,059,205207,42322,066,09422,066,09464,184880220
Chromosome 21AllAssembled moleculeUnlocalized scaffolds34,929,15834,669,468259,69032134,900,32634,640,636259,69021,763,19921,763,199259,690550110
Chromosome 22Assembled molecule35,301,726635,146,99025,833,109125
Chromosome XAllAssembled moleculeUnlocalized scaffolds154,882,559151,216,2053,666,3541239153,590,273150,025,5503,564,72355,916,17855,916,1783,292,90937316220
unplacedAssembled molecule211,088,4705,190209,910,62964,14630