Warning: The NCBI web site requires JavaScript to function. more...

Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

Bos_indicus_1.0

This assembly has been replaced. See current version

Organism name:: Bos indicus (zebu cattle)
Infraspecific name:: Breed: Nelore
Isolate:: QUIL7308
Sex:: male
BioSample:: SAMN02953802
BioProject:: PRJNA72827
Submitter:: Genoa Biotecnologia SA
Date:: 2012/02/16
Assembly level:: Contig
Genome representation:: full
GenBank assembly accession:: GCA_000247795.1 (replaced)
RefSeq assembly accession:: n/a
RefSeq assembly and GenBank assembly identical:: n/a
WGS Project:: AGFL01
Assembly method:: BWA v. 0.5.9
Reference guided assembly:: GCF_000003205.2; Btau_4.0
Genome coverage:: 52x
Sequencing technology:: SOLiD

IDs: 355988 [UID] 355988 [GenBank]

See Genome Information for Bos indicus

Pathogen Detection Resources

There are 36 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Total sequence length	2,475,812,658
Total ungapped length	2,475,812,658
Number of contigs	253,769
Contig N50	28,375
Contig L50	25,227
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	253,769

Supplemental Content

Access the data

Assembly Information

Related Information

BioProject
BioProject
BioSample
BioSample
PubMed
PubMed
Taxonomy
Taxonomy
WGS Master
WGS Master

PubMed articles for this assembly

Genome sequence and assembly of Bos indicus.
Genome sequence and assembly of Bos indicus.
Canavez FC, Luche DD, Stothard P, Leite KR, Sousa-Canavez JM...

Recent activity

Clear Turn Off Turn On

Bos_indicus_1.0 - Genome - Assembly - NCBI
Bos_indicus_1.0 - Genome - Assembly - NCBI

Assembly
Glaesserella parasuis H465
Glaesserella parasuis H465
Glaesserella parasuis H465 Genome sequencing and assembly

BioProject
txid1275970[Organism:noexp] (1)
BioProject
Taxonomy Links for Nucleotide (Select 18676579) (1)
Taxonomy
C1300260[trait identifier] AND "GenomeConnect - Invitae Patient I... (1)
C1300260[trait identifier] AND "GenomeConnect - Invitae Patient Insights Network"[submitter]
Search

ClinVar

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assembly Definition
Assembly Statistics

Global assembly definition

Download the full sequence report

The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

Primary Assembly

Molecule	Total Length	Contig Count	Ungapped Length	Contig N50	Spanned Gaps	Unspanned Gaps
unplaced	2,475,812,658	253,769	2,475,812,658	28,375	0	0