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8x_WGS

Organism name:
Vitis vinifera (wine grape)
Infraspecific name:
Cultivar: PN40024
BioProject:
PRJEA18785
Submitter:
International Grape Genome Program
Date:
2007/09/19
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000003745.1 (replaced)
RefSeq assembly accession:
GCF_000003745.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CAAP02
Genome coverage:
8.4x

IDs: 4648 [UID] 4678 [GenBank] 4648 [RefSeq]

See Genome Information for Vitis vinifera

Pathogen Detection Resources

There are 21 assemblies for this organism

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History (Show revision history)

Comment

This is a 'working draft' sequence, generated by whole genome shotgun. This assembly was made at a 8.4X coverage of the genome, sequenced by Sanger method. Sequencing effort has been performed by GENOSCOPE, CRIBI (Consortium VIGNA) and IGA. More ... information available at http://www.genoscope.cns.fr/vitis and http://www.vitisgenome.it/ and http://www.appliedgenomics.org/ Email: seqref@genoscope.cns.fr.  more

Global statistics

Total sequence length493,204,830
Total ungapped length467,476,164
Gaps between scaffolds124
Number of scaffolds3,514
Scaffold N502,065,076
Scaffold L5059
Number of contigs19,577
Contig N5065,871
Contig L502,028
Total number of chromosomes and plasmids19
Number of component sequences (WGS or clone)19,577

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000003755.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CU462738.1=NC_012007.24
Chromosome 2CU462739.1=NC_012008.21
Chromosome 3CU462740.1=NC_012009.22
Chromosome 4CU462741.1=NC_012010.20
Chromosome 5CU462742.1=NC_012011.20
Chromosome 6CU462743.1=NC_012012.20
Chromosome 7CU462744.1=NC_012013.21
Chromosome 8CU462745.1=NC_012014.21
Chromosome 9CU462746.1=NC_012015.20
Chromosome 10CU462747.1=NC_012016.27
Chromosome 11CU462748.1=NC_012017.22
Chromosome 12CU462749.1=NC_012018.22
Chromosome 13CU462750.1=NC_012019.22
Chromosome 14CU462751.1=NC_012020.23
Chromosome 15CU462752.1=NC_012021.22
Chromosome 16CU462753.1=NC_012022.29
Chromosome 17CU462754.1=NC_012023.22
Chromosome 18CU462755.1=NC_012024.25
Chromosome 19CU462756.1=NC_012025.24
unplacedn/an/an/a3,324

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule493,204,8303,514467,476,1642,065,07616,063124
Chromosome 1AllAssembled moleculeUnlocalized scaffolds21,124,00615,630,8165,493,19095420,525,61915,189,6055,336,0144,229,9984,229,9981,567,357465342123440
Chromosome 2AllAssembled moleculeUnlocalized scaffolds17,664,20917,603,40060,8091615116,194,54816,147,57846,9701,359,0841,359,08460,809461456514140
Chromosome 3AllAssembled moleculeUnlocalized scaffolds11,529,19310,186,9271,342,26675211,007,7469,699,4461,308,3006,238,0176,238,017867,93230025248440
Chromosome 4Assembled molecule19,293,0761418,250,4183,066,22548913
Chromosome 5Assembled molecule23,428,2991022,318,1622,071,9336119
Chromosome 6Assembled molecule24,148,9181022,819,3085,371,7536159
Chromosome 7AllAssembled moleculeUnlocalized scaffolds15,409,89015,233,747176,1431211114,313,14214,163,140150,0023,189,7953,189,795176,1433623481410100
Chromosome 8AllAssembled moleculeUnlocalized scaffolds21,569,35221,557,22712,1251110120,783,54920,771,49012,0592,700,3012,700,30112,1255215201990
Chromosome 9Assembled molecule16,532,244616,012,4572,980,8554135
Chromosome 10AllAssembled moleculeUnlocalized scaffolds11,402,0449,647,0401,755,004136710,819,6379,120,5191,699,1181,771,4722,296,208437,62032325370550
Chromosome 11AllAssembled moleculeUnlocalized scaffolds15,893,71013,936,3031,957,40775215,578,07513,646,0641,932,0115,465,6655,465,6651,210,23842838246440
Chromosome 12AllAssembled moleculeUnlocalized scaffolds21,366,72418,540,8172,825,9071210220,409,29217,627,4182,781,8742,817,1452,817,1451,464,31356748087990
Chromosome 13AllAssembled moleculeUnlocalized scaffolds16,771,35115,191,9481,579,403119216,167,57314,607,8371,559,7362,412,8162,542,976932,74945741047880
Chromosome 14AllAssembled moleculeUnlocalized scaffolds24,910,86019,480,4345,430,426107324,190,51118,991,7385,198,7733,690,1524,315,0323,690,152646499147660
Chromosome 15AllAssembled moleculeUnlocalized scaffolds11,990,1897,693,6134,296,57642211,601,4757,504,4224,097,0532,833,7564,849,8572,711,818377234143110
Chromosome 16AllAssembled moleculeUnlocalized scaffolds12,503,7098,158,8514,344,858123912,157,9407,897,9214,260,0191,537,3105,958,5811,275,354336216120220
Chromosome 17AllAssembled moleculeUnlocalized scaffolds14,635,49213,059,0921,576,40075214,194,62312,628,5391,566,0845,345,8175,345,8171,567,21530527629440
Chromosome 18AllAssembled moleculeUnlocalized scaffolds25,574,96719,691,2555,883,712105524,932,18519,230,7695,701,4163,827,94412,675,3881,429,425579396183440
Chromosome 19AllAssembled moleculeUnlocalized scaffolds15,895,88314,071,8131,824,07095415,418,72813,610,1781,808,5502,907,5947,851,0081,160,22345541045440
unplacedAssembled molecule151,560,7143,324139,781,176624,3167,3530