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Source database (GenBank or RefSeq) File type

palm_55x_up_171113_PBpolish2nd_filt_p

Organism name:

Phoenix dactylifera (date palm)

Infraspecific name:

Cultivar: Barhee BC4

Sex:

male

BioSample:

SAMN05011615

BioProject:

PRJNA322046

Submitter:

The University of Arizona

Date:

2019/11/04

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_009389715.1 (latest)

RefSeq assembly accession:

GCF_009389715.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT
Different: chromosome Pltd.

Data displayed for RefSeq version

WGS Project:

NBZB01

Assembly method:

Falcon v. 2017.06.28-18.01-py2.7-ucs4

Expected final version:

Genome coverage:

100x

Sequencing technology:

PacBio

IDs: 5145981 [UID] 15020668 [GenBank] 24587648 [RefSeq]

See Genome Information for Phoenix dactylifera

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_009389715.1	≠	GCF_009389715.1	palm_55x_up_171113_PBpolish2nd_filt_p	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	773,189,301
Total ungapped length	773,157,601
Gaps between scaffolds	0
Number of scaffolds	2,391
Scaffold N50	4,728,343
Scaffold L50	19
Number of contigs	2,708
Contig N50	897,195
Contig L50	196
Total number of chromosomes and plasmids	20
Number of component sequences (WGS or clone)	2,391

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM018766.1	=	NC_052392.1	0
Chromosome 2	CM018767.1	=	NC_052393.1	0
Chromosome 3	CM018768.1	=	NC_052394.1	0
Chromosome 4	CM018769.1	=	NC_052395.1	0
Chromosome 5	CM018770.1	=	NC_052396.1	0
Chromosome 6	CM018771.1	=	NC_052397.1	0
Chromosome 7	CM018772.1	=	NC_052398.1	0
Chromosome 8	CM018773.1	=	NC_052399.1	0
Chromosome 9	CM018774.1	=	NC_052400.1	0
Chromosome 10	CM018775.1	=	NC_052401.1	0
Chromosome 11	CM018776.1	=	NC_052402.1	0
Chromosome 12	CM018777.1	=	NC_052403.1	0
Chromosome 13	CM018778.1	=	NC_052404.1	0
Chromosome 14	CM018779.1	=	NC_052405.1	0
Chromosome 15	CM018780.1	=	NC_052406.1	0
Chromosome 16	CM018781.1	=	NC_052407.1	0
Chromosome 17	CM018782.1	=	NC_052408.1	0
Chromosome 18	CM018783.1	=	NC_052409.1	0
unplaced	n/a	n/a	n/a	2,371

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	JN375330.1	=	NC_016740.1
Chloroplast Pltd	GU811709.2	=	NC_013991.2

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	772,315,838	2,389	772,284,138	4,728,343	317
Chromosome 1	40,814,151	1	40,808,651	40,814,151	55
Chromosome 2	29,301,675	1	29,299,975	29,301,675	17
Chromosome 3	24,755,689	1	24,754,389	24,755,689	13
Chromosome 4	33,281,721	1	33,279,521	33,281,721	22
Chromosome 5	18,619,412	1	18,616,412	18,619,412	30
Chromosome 6	18,596,258	1	18,594,658	18,596,258	16
Chromosome 7	16,639,383	1	16,638,283	16,639,383	11
Chromosome 8	31,698,078	1	31,696,278	31,698,078	18
Chromosome 9	22,757,669	1	22,756,569	22,757,669	11
Chromosome 10	15,825,318	1	15,823,818	15,825,318	15
Chromosome 11	29,487,722	1	29,485,222	29,487,722	25
Chromosome 12	14,769,854	1	14,767,454	14,769,854	24
Chromosome 13	12,891,333	1	12,890,333	12,891,333	10
Chromosome 14	24,628,924	1	24,627,224	24,628,924	17
Chromosome 15	12,030,914	1	12,029,914	12,030,914	10
Chromosome 16	13,553,361	1	13,552,461	13,553,361	9
Chromosome 17	16,126,437	1	16,125,737	16,126,437	7
Chromosome 18	9,812,533	1	9,811,833	9,812,533	7
unplaced	386,725,406	2,371	386,725,406	303,010	0

Molecule	Total Length
All	873,463
Mitochondrion MT	715,001
Chloroplast Pltd	158,462

Assembly

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palm_55x_up_171113_PBpolish2nd_filt_p

See Genome Information for Phoenix dactylifera

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear