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CSIRO_BtryS06_freeze1

  • Anomalous assembly.
Organism name:
Bactrocera tryoni (Queensland fruit fly)
Isolate:
S06
Sex:
male
BioSample:
SAMN12586630
BioProject:
PRJNA560467
Submitter:
CSIRO
Date:
2021/01/19
Assembly level:
Chromosome
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_016617805.1 (replaced)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
VWMZ01
Assembly method:
Flye with Nanopore reads and MaSURCA super reads. v. June 2019
Expected final version:
yes
Genome coverage:
60.0x
Sequencing technology:
Illumina; Oxford Nanopore MinION

IDs: 9150801 [UID] 24644258 [GenBank]

See Genome Information for Bactrocera tryoni

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

In Feb 2021 154 of the VWMZ01 sequences were suppressed because they are contaminants.

Global statistics

Total sequence length586,530,683
Total ungapped length585,574,274
Gaps between scaffolds0
Number of scaffolds6,044
Scaffold N5081,886,338
Scaffold L504
Number of contigs8,818
Contig N50342,859
Contig L50436
Total number of chromosomes and plasmids5
Number of component sequences (WGS or clone)6,044

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_016617835.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM028320.1n/an/a0
Chromosome 2CM028321.1n/an/a0
Chromosome 3CM028322.1n/an/a0
Chromosome 4CM028323.1n/an/a0
Chromosome 5CM028324.1n/an/a0
unplacedn/an/an/a6,039

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All586,530,6836,044585,574,27481,886,3382,7740
Chromosome 190,445,925190,409,72190,445,9252950
Chromosome 285,403,544185,356,03885,403,5444050
Chromosome 387,780,629187,730,96087,780,6294400
Chromosome 479,644,399179,605,98479,644,3993300
Chromosome 581,886,338181,838,15681,886,3383850
unplaced161,369,8486,039160,633,4151,339,9179190