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CamDro2

Organism name:
Camelus dromedarius (Arabian camel)
Infraspecific name:
Breed: African
Isolate:
Drom800
Sex:
female
BioSample:
SAMN03252735
BioProject:
PRJNA269274
Submitter:
Vetmeduni Vienna
Date:
2019/05/20
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000803125.2 (replaced)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JWIN02
Assembly method:
ABySS v. 1.3.6; HiRise v. MAY-2017; PBJelly v. 15.8.24; ABySS Sealer v. 2.0.2
Expected final version:
no
Genome coverage:
65.0x
Sequencing technology:
Illumina HiSeq; Dovetail Hi-C and Chicago; PacBio Sequel

IDs: 2938421 [UID] 10134988 [GenBank]

See Genome Information for Camelus dromedarius

There are 7 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,154,386,959
Total ungapped length2,133,843,933
Gaps between scaffolds0
Number of scaffolds23,439
Scaffold N5075,021,453
Scaffold L5011
Number of contigs59,913
Contig N50204,356
Contig L503,014
Total number of chromosomes and plasmids37
Number of component sequences (WGS or clone)23,439

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000803135.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM016627.1n/an/a0
Chromosome 2CM016628.1n/an/a0
Chromosome 3CM016629.1n/an/a0
Chromosome 4CM016630.1n/an/a0
Chromosome 5CM016631.1n/an/a0
Chromosome 6CM016632.1n/an/a0
Chromosome 7CM016633.1n/an/a0
Chromosome 8CM016634.1n/an/a0
Chromosome 9CM016635.1n/an/a0
Chromosome 10CM016636.1n/an/a0
Chromosome 11CM016637.1n/an/a0
Chromosome 12CM016638.1n/an/a0
Chromosome 13CM016639.1n/an/a0
Chromosome 14CM016640.1n/an/a0
Chromosome 15CM016641.1n/an/a0
Chromosome 16CM016642.1n/an/a0
Chromosome 17CM016643.1n/an/a0
Chromosome 18CM016644.1n/an/a0
Chromosome 19CM016645.1n/an/a0
Chromosome 20CM016646.1n/an/a0
Chromosome 21CM016647.1n/an/a0
Chromosome 22CM016648.1n/an/a0
Chromosome 23CM016649.1n/an/a0
Chromosome 24CM016650.1n/an/a0
Chromosome 25CM016651.1n/an/a0
Chromosome 26CM016652.1n/an/a0
Chromosome 27CM016653.1n/an/a0
Chromosome 28CM016654.1n/an/a0
Chromosome 29CM016655.1n/an/a0
Chromosome 30CM016656.1n/an/a0
Chromosome 31CM016657.1n/an/a0
Chromosome 32CM016658.1n/an/a0
Chromosome 33CM016659.1n/an/a0
Chromosome 34CM016660.1n/an/a0
Chromosome 35CM016661.1n/an/a0
Chromosome 36CM016662.1n/an/a0
Chromosome XCM016663.1n/an/a0
unplacedn/an/an/a23,402

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,154,386,95923,4392,133,843,93375,021,45336,4740
Chromosome 1124,992,3801124,780,416124,992,3809080
Chromosome 2122,214,0541122,044,305122,214,0549250
Chromosome 3119,848,9021119,693,234119,848,9029550
Chromosome 468,091,223168,031,50868,091,2235660
Chromosome 597,585,432197,460,64297,585,4326620
Chromosome 698,422,860197,982,03798,422,8601,1570
Chromosome 786,599,670186,461,19286,599,6707090
Chromosome 881,142,383180,850,01381,142,3837980
Chromosome 976,897,086176,598,85876,897,0869150
Chromosome 1075,021,453174,913,14775,021,4536920
Chromosome 1184,733,476183,729,73984,733,4761,4090
Chromosome 1267,762,057167,380,99267,762,0578990
Chromosome 1370,124,664169,900,97870,124,6646820
Chromosome 1470,248,310170,144,87370,248,3106250
Chromosome 1557,329,957157,170,46857,329,9575450
Chromosome 1655,323,184155,094,32655,323,1847810
Chromosome 1751,074,832150,876,52751,074,8326090
Chromosome 1833,149,302132,948,31433,149,3025010
Chromosome 1944,995,842144,615,09144,995,8426520
Chromosome 2042,364,670142,165,43342,364,6705790
Chromosome 2131,977,610131,582,47331,977,6104890
Chromosome 2227,993,734127,914,17427,993,7343700
Chromosome 2334,501,429134,447,55634,501,4293330
Chromosome 2424,820,305124,645,04524,820,3053520
Chromosome 2540,721,713140,435,16240,721,7135570
Chromosome 2627,960,160127,921,78827,960,1602430
Chromosome 2728,629,510128,355,73828,629,5104430
Chromosome 2816,096,629116,053,69316,096,6291750
Chromosome 2926,133,222126,053,78026,133,2222920
Chromosome 3025,857,028125,732,84925,857,0283620
Chromosome 3117,414,143117,289,04917,414,1432860
Chromosome 3224,922,612124,826,72724,922,6123390
Chromosome 3322,470,471122,254,74122,470,4713700
Chromosome 3422,447,909122,410,90722,447,9092720
Chromosome 3527,101,552126,703,82827,101,5526020
Chromosome 365,919,09415,601,2245,919,0942710
Chromosome X119,869,8501119,262,981119,869,8501,5850
unplaced101,628,25123,40289,510,12529,39513,5640