kPetMar1.alt

Organism name:

Petromyzon marinus (sea lamprey)

Isolate:

kPetMar1

Sex:

male

BioSample:

SAMN12629506

BioProject:

PRJNA562012

Submitter:

Vertebrate Genomes Project

Date:

2020/02/24

Assembly type:

alternate-pseudohaplotype

Assembly level:

Scaffold

Genome representation:

full

GenBank assembly accession:

GCA_010993595.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

JAAIYF01

Assembly method:

FALCON v. DNANexus 1.9.0; FALCON-Unzip v. DNANexus 1.0.6; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; scaff10x v. 4.1.0; Bionano Solve DLS v. 3.2.1; Salsa HiC v. 2.2; Arrow smrtanalysis Pacbio polishing & gap filling v. smrtlink_6.0.0.47841; longranger align v. 2.2.2; freebayes Illumina polishing v. 1.3.1; gEVAL manual curation v. 2019-12-09; VGP assembly pipeline individual v. 1.6

Expected final version:

no

Genome coverage:

62.36x

Sequencing technology:

PacBio Sequel I CLR; llumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS

Linked assembly:

GCA_010993605.1 (principal pseudohaplotype of diploid)

IDs: 6050191 [UID] 17237198 [GenBank]