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ASM1369395v1

Organism name:
Candidatus Thiothrix singaporensis (g-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
SSD2
BioSample:
SAMN15248433
BioProject:
PRJNA607349
Submitter:
Singapore Centre for Environmental Life Sciences Engineering
Date:
2020/07/25
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_013693955.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
Assembly method:
Canu v. 1.8
Expected final version:
no
Genome coverage:
74x
Sequencing technology:
Oxford Nanopore MiniION

IDs: 7518641 [UID] 20763498 [GenBank]

See Genome Information for Candidatus Thiothrix singaporensis

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/08/2020 17:23:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.12
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,627
CDSs (total)::4,574
Genes (coding)::4,097
CDSs (with protein)::4,097
Genes (RNA)::53
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::43
ncRNAs::4
Pseudo Genes (total)::477
CDSs (without protein)::477
Pseudo Genes (ambiguous residues)::0 of 477
Pseudo Genes (frameshifted)::326 of 477
Pseudo Genes (incomplete)::122 of 477
Pseudo Genes (internal stop)::63 of 477
Pseudo Genes (multiple problems)::32 of 477
CRISPR Arrays::11
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,541,730
Total ungapped length4,541,730
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_013693965.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP059265.1n/an/a

Assembly statistics

MoleculeTotal
Length
Chromosome 4,541,730

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Thiothrix singaporensisCandidatus Thiothrix singaporensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000260135.1Thiothrix niveatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.5032.3631.33

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna