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AmerM5

  • Anomalous assembly.
Organism name:
Anopheles merus (mosquitos)
Infraspecific name:
Strain: MAF
Sex:
male
BioSample:
SAMN14825642
BioProject:
PRJNA660041
Submitter:
Virginia Tech
Date:
2021/03/24
Assembly level:
Chromosome
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_017562075.1 (replaced)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JADFFO01
Assembly method:
Canu v. 1.7.1
Expected final version:
yes
Genome coverage:
50x
Sequencing technology:
PacBio Sequel

IDs: 9637141 [UID] 25788608 [GenBank]

See Genome Information for Anopheles merus

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

In April 2021 102 sequences were suppressed because they are contaminants

Global statistics

Total sequence length300,125,122
Total ungapped length300,098,022
Gaps between scaffolds0
Number of scaffolds1,429
Scaffold N5050,316,797
Scaffold L503
Number of contigs1,700
Contig N502,729,089
Contig L5029
Total number of chromosomes and plasmids5
Number of component sequences (WGS or clone)1,429

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_017562175.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome XCM029762.1n/an/a0
Chromosome 2RCM029764.1n/an/a0
Chromosome 2LCM029763.1n/an/a0
Chromosome 3RCM029766.1n/an/a0
Chromosome 3LCM029765.1n/an/a0
unplacedn/an/an/a1,424

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All300,125,1221,429300,098,02250,316,7972710
Chromosome X26,568,755126,557,05526,568,7551170
Chromosome 2R63,277,359163,271,75963,277,359560
Chromosome 2L54,243,648154,240,54854,243,648310
Chromosome 3R50,316,797150,313,79750,316,797300
Chromosome 3L39,960,157139,956,45739,960,157370
unplaced65,758,4061,42465,758,40656,08500