bCucCan1.alt

Organism name:

Cuculus canorus (common cuckoo)

Isolate:

bCucCan1

Sex:

female

BioSample:

SAMN12629508

BioProject:

PRJNA562016

Submitter:

Vertebrate Genomes Project

Date:

2021/04/15

Assembly type:

alternate-pseudohaplotype

Assembly level:

Scaffold

Genome representation:

full

GenBank assembly accession:

GCA_017976305.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

JAGIYU01

Assembly method:

FALCON v. DX 2.0.2; FALCON-Unzip v. DX 8.0.1; purge_dups v. DX 19-08-10; scaff10X v. DX 2.0.3; bionano Solve v. DX 3.4.0; Salsa2 HiC v. DX 2.2.0; pbalign v. 0.3.2; pbgcpp v. 1.9.0; Longranger Align v. DX 2.2.2.1; freebayes v. DX 19-07-11; gEVAL manual curation v. 2021-03-30; VGP assembly pipeline v. 1.5

Expected final version:

no

Genome coverage:

64.31x

Sequencing technology:

PacBio Sequel II CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS

Linked assembly:

GCA_017976375.1 (principal pseudohaplotype of diploid)

IDs: 9844271 [UID] 26270208 [GenBank]