rGopFla2.pat.asm

Organism name:

Gopherus flavomarginatus (Mexican gopher tortoise)

Isolate:

rGopFla2

BioSample:

SAMN24199108

BioProject:

PRJNA794189

Submitter:

Vertebrate Genomes Project

Date:

2022/09/08

Assembly type:

haploid (paternal haplotype of diploid)

Assembly level:

Scaffold

Genome representation:

full

GenBank assembly accession:

GCA_025201965.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

JAMKFD01

Assembly method:

TrioCanu v. 1.8+298; Arrow SMRTLink v. 7.0.1; purge_dups v. 0.0.3; scaff 10X v. 4.1; Bionano solve v. 3.3; Salsa v. 2.2.0; Arrow polishing + gap filling v. 7.0.1; Longranger v. 2.2.2; Freebayes v. 1.3.1; Merfin v. 1.0; gEVAL manuel curation v. 2021-11-02

Expected final version:

no

Genome coverage:

57.78x

Sequencing technology:

PacBio Sequel I CLR; Bionano Genomics DLS; Arima Genomics Hi-C; 10X Genomics linked reads

Linked assembly:

GCA_025201925.1 (maternal haplotype of diploid)

IDs: 13781361 [UID] 35856288 [GenBank]