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idAnaLude1.1

Organism name:
Anastrepha ludens (Mexican fruit fly)
Isolate:
Willacy
Sex:
male
BioSample:
SAMN25644084
BioProject:
PRJNA803324
Submitter:
United States Department of Agriculture
Date:
2023/02/06
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_028408465.1 (latest)
RefSeq assembly accession:
GCF_028408465.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAKYJY01
Assembly method:
HiFiASM v. 0.16.1-r375
Expected final version:
yes
Genome coverage:
44x
Sequencing technology:
PacBio Sequel
Linked assembly:
GCA_028414665.1 (alternate pseudohaplotype of diploid)

IDs: 15818041 [UID] 40617108 [GenBank] 41112048 [RefSeq]

See Genome Information for Anastrepha ludens

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length820,766,187
Total ungapped length820,763,787
Gaps between scaffolds0
Number of scaffolds140
Scaffold N50131,385,309
Scaffold L503
Number of contigs164
Contig N5078,300,995
Contig L504
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)140

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_028408475.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 2CM051846.1=NC_071498.10
Chromosome 3CM051847.1=NC_071499.10
Chromosome 4CM051848.1=NC_071500.10
Chromosome 5CM051849.1=NC_071501.10
Chromosome 6CM051850.1=NC_071502.10
Chromosome XCM051851.1=NC_071503.10
Chromosome YCM051852.1=NC_071504.10
unplacedn/an/an/a133

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All820,766,187140820,763,787131,385,309240
Chromosome 2185,090,8971185,090,797185,090,89710
Chromosome 3133,334,1151133,334,115133,334,11500
Chromosome 4131,385,3091131,385,309131,385,30900
Chromosome 5128,169,9301128,169,630128,169,93030
Chromosome 6127,816,0561127,815,656127,816,05640
Chromosome X99,992,179199,990,87999,992,179130
Chromosome Y6,146,28216,146,1826,146,28210
unplaced8,831,4191338,831,219161,80320