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idAnaLude1.1 alternate haplotype

Organism name:
Anastrepha ludens (Mexican fruit fly)
Isolate:
Willacy
Sex:
male
BioSample:
SAMN25644084
BioProject:
PRJNA807718
Submitter:
United States Department of Agriculture
Date:
2023/02/02
Assembly type:
alternate-pseudohaplotype
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_028414665.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAKYJZ01
Assembly method:
HiFiASM v. 0.16.1-r375
Expected final version:
yes
Genome coverage:
44x
Sequencing technology:
PacBio Sequel
Linked assembly:
GCA_028408465.1 (principal pseudohaplotype of diploid)

IDs: 15767381 [UID] 40466128 [GenBank]

See Genome Information for Anastrepha ludens

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length786,673,534
Total ungapped length786,670,284
Gaps between scaffolds0
Number of scaffolds15,663
Scaffold N50181,426
Scaffold L501,187
Number of contigs15,720
Contig N50181,426
Contig L501,187
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)15,663

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced786,673,53415,663786,670,284181,426570