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IDs: 14084931 [UID] 36593328 [GenBank]
The assembly xgPatVulg1.2 is based on 62x PacBio data, 10X Genomics Chromium data, and Arima2 Hi-C data generated by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation ... with Hifiasm, retained haplotig separation with purge_dups, and Hi-C based scaffolding with YaHS. The mitochondrial genome was assembled using MitoHiFi. Finally, the primary assembly was analysed and manually improved using gEVAL. This alternate haplotype assembly combines the haplotigs separated by purge_dups with haplotigs separated from the primary assembly during curation. more
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