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v1.0

Organism name:
Selaginella moellendorffii (club-mosses)
BioSample:
SAMN02981255
BioProject:
PRJNA13078
Submitter:
Selaginella Consortium
Date:
2010/07/06
Release type:
minor
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000143415.2 (latest)
RefSeq assembly accession:
GCF_000143415.3 (replaced)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ADFJ01
Assembly method:
Arachne v. 20070201
Genome coverage:
7.0x
Sequencing technology:
Sanger

IDs: 422938 [UID] 422878 [GenBank] 422938 [RefSeq]

See Genome Information for Selaginella moellendorffii

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov/Selaginella
JGI Project ID: 3640226
The DNA is available from Jody Banks (banksj@purdue.edu)
Contacts: Jody Banks (banksj@purdue.edu)
 Igor Grigoriev (ivgrigoriev@lbl.gov)
Annotation done by the JGI and the Selaginella Consortium.
The JGI and collaborators endorse the principles for the distribution and use of ... large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Global statistics

Total sequence length212,501,708
Total ungapped length208,528,962
Gaps between scaffolds0
Number of scaffolds758
Scaffold N501,749,879
Scaffold L5038
Number of contigs5,155
Contig N50119,796
Contig L50514
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)5,155

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced212,315,224757208,371,0261,749,8794,3950
MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MTAllAssembled moleculeUnlocalized scaffolds186,4840186,484101157,9360157,936186,4840186,484202000