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ASM21459v1

Organism name:
Methylophaga aminisulfidivorans MP (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MP
BioSample:
SAMN02469574
BioProject:
PRJNA66315
Submitter:
Chosun University
Date:
2011/05/23
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000214595.2 (latest)
RefSeq assembly accession:
GCF_000214595.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AFIG01
Assembly method:
Newbler v. 2.3
Genome coverage:
60x
Sequencing technology:
454 GS FLX Titanium

IDs: 289328 [UID] 289308 [GenBank] 289328 [RefSeq]

See Genome Information for Methylophaga aminisulfidivorans

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,261,960
Total ungapped length3,261,960
Number of contigs3
Contig N502,266,798
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,261,96033,261,9602,266,79800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methylophaga aminisulfidivorans MPMethylophaga aminisulfidivorans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_030159795.1Methylophaga thalassicatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.1083.9787.39

ANI result

Taxonomy check statusBest match statusComment
OKmismatchAssembly is the type-strain, mismatch is within genus and expected