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Source database (GenBank or RefSeq) File type

ObraRS2

Organism name:

Oryza brachyantha (malo sina)

BioSample:

SAMN02981362

BioProject:

PRJNA70533

Submitter:

The Institute of Genetics and Developmental Biology

Date:

2021/03/10

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000231095.3 (latest)

RefSeq assembly accession:

GCF_000231095.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

AGAT02

Assembly method:

MECAT v. 1.3; CANU v. 1.5

Expected final version:

Genome coverage:

150.0x

Sequencing technology:

PacBio

IDs: 9506301 [UID] 25500338 [GenBank] 25859528 [RefSeq]

See Genome Information for Oryza brachyantha

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000231095.3	≠	GCF_000231095.2	ObraRS2	Chromosome	Latest GenBank, Latest RefSeq
GCA_000231095.2	=	GCF_000231095.1	Oryza_brachyantha.v1.4b	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000231095.1	n/a	n/a	Oryza_brachyantha.v1.4	Chromosome	Replaced GenBank

Comment

Global statistics

Total sequence length	263,329,681
Total ungapped length	263,328,281
Gaps between scaffolds	14
Number of scaffolds	74
Scaffold N50	11,392,507
Scaffold L50	9
Number of contigs	74
Contig N50	11,392,507
Contig L50	9
Total number of chromosomes and plasmids	13
Number of component sequences (WGS or clone)	74

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM001241.3	=	NC_023163.2	0
Chromosome 2	CM001242.2	=	NC_023164.2	0
Chromosome 3	CM001243.3	=	NC_023165.2	0
Chromosome 4	CM001244.3	=	NC_023166.2	0
Chromosome 5	CM001245.3	=	NC_023167.2	0
Chromosome 6	CM001246.3	=	NC_023168.2	0
Chromosome 7	CM001247.3	=	NC_023169.2	0
Chromosome 8	CM001248.3	=	NC_023170.2	0
Chromosome 9	CM001249.3	=	NC_023171.2	0
Chromosome 10	CM001250.3	=	NC_023172.2	0
Chromosome 11	CM001251.3	=	NC_023173.2	0
Chromosome 12	CM001252.3	=	NC_023174.2	0
unplaced	n/a	n/a	n/a	47

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Unspanned Gaps
All	263,195,077	73	263,193,677	11,392,507	14
Chromosome 1	33,554,891	2	33,554,791	21,088,367	1
Chromosome 2	27,476,678	2	27,476,578	17,226,648	1
Chromosome 3	29,856,040	2	29,855,940	16,107,089	1
Chromosome 4	21,827,379	2	21,827,279	16,782,315	1
Chromosome 5	20,245,399	2	20,245,299	12,510,418	1
Chromosome 6	21,974,636	2	21,974,536	11,392,507	1
Chromosome 7	19,450,094	2	19,449,994	12,057,407	1
Chromosome 8	18,299,912	2	18,299,812	10,067,547	1
Chromosome 9	15,506,556	3	15,506,356	11,241,863	2
Chromosome 10	16,246,320	3	16,246,120	5,930,716	2
Chromosome 11	17,534,090	2	17,533,990	9,644,452	1
Chromosome 12	16,931,956	2	16,931,856	8,516,079	1
unplaced	4,291,126	47	4,291,126	120,491	0

Assembly

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ObraRS2

See Genome Information for Oryza brachyantha

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear