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Source database (GenBank or RefSeq) File type

Bos_indicus_1.0

Organism name:

Bos indicus (zebu cattle)

Infraspecific name:

Breed: Nelore

Isolate:

QUIL7308

Sex:

male

BioSample:

SAMN02953802

BioProject:

PRJNA72827

Submitter:

Genoa Biotecnologia SA

Date:

2014/11/25

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000247795.2 (latest)

RefSeq assembly accession:

GCF_000247795.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

AGFL01

Assembly method:

BWA v. 0.5.9

Reference guided assembly:

GCF_000003205.2; Btau_4.0

Genome coverage:

52x

Sequencing technology:

SOLiD

IDs: 234761 [UID] 1421958 [GenBank] 3933778 [RefSeq]

See Genome Information for Bos indicus

Pathogen Detection Resources

There are 36 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000247795.2	≠	GCF_000247795.1	Bos_indicus_1.0	Chromosome	Latest GenBank, Latest RefSeq
GCA_000247795.1	n/a	n/a	Bos_indicus_1.0	Contig	Replaced GenBank

Comment

Global statistics

Total sequence length	2,673,965,444
Total ungapped length	2,475,828,999
Gaps between scaffolds	0
Number of scaffolds	32
Scaffold N50	106,310,653
Scaffold L50	11
Number of contigs	253,770
Contig N50	28,375
Contig L50	25,227
Total number of chromosomes and plasmids	32
Number of component sequences (WGS or clone)	253,770

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1	CM003021.1	=	NC_032650.1
Chromosome 2	CM003022.1	=	NC_032651.1
Chromosome 3	CM003023.1	=	NC_032652.1
Chromosome 4	CM003024.1	=	NC_032653.1
Chromosome 5	CM003025.1	=	NC_032654.1
Chromosome 6	CM003026.1	=	NC_032655.1
Chromosome 7	CM003027.1	=	NC_032656.1
Chromosome 8	CM003028.1	=	NC_032657.1
Chromosome 9	CM003029.1	=	NC_032658.1
Chromosome 10	CM003030.1	=	NC_032659.1
Chromosome 11	CM003031.1	=	NC_032660.1
Chromosome 12	CM003032.1	=	NC_032661.1
Chromosome 13	CM003033.1	=	NC_032662.1
Chromosome 14	CM003034.1	=	NC_032663.1
Chromosome 15	CM003035.1	=	NC_032664.1
Chromosome 16	CM003036.1	=	NC_032665.1
Chromosome 17	CM003037.1	=	NC_032666.1
Chromosome 18	CM003038.1	=	NC_032667.1
Chromosome 19	CM003039.1	=	NC_032668.1
Chromosome 20	CM003040.1	=	NC_032669.1
Chromosome 21	CM003041.1	=	NC_032670.1
Chromosome 22	CM003042.1	=	NC_032671.1
Chromosome 23	CM003043.1	=	NC_032672.1
Chromosome 24	CM003044.1	=	NC_032673.1
Chromosome 25	CM003045.1	=	NC_032674.1
Chromosome 26	CM003046.1	=	NC_032675.1
Chromosome 27	CM003047.1	=	NC_032676.1
Chromosome 28	CM003048.1	=	NC_032677.1
Chromosome 29	CM003049.1	=	NC_032678.1
Chromosome X	CM003050.1	=	NC_032679.1
Chromosome Y	CM003051.1	=	NC_032680.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,673,949,103	31	2,475,812,658	106,310,653	253,738
Chromosome 1	161,108,492	1	149,567,130	161,108,492	12,592
Chromosome 2	140,680,885	1	132,521,881	140,680,885	10,688
Chromosome 3	127,865,068	1	119,066,151	127,865,068	9,598
Chromosome 4	124,429,915	1	117,531,185	124,429,915	10,220
Chromosome 5	125,642,736	1	117,210,018	125,642,736	10,267
Chromosome 6	122,646,612	1	112,862,637	122,646,612	9,915
Chromosome 7	111,948,857	1	105,062,874	111,948,857	9,291
Chromosome 8	116,941,312	1	108,147,333	116,941,312	8,610
Chromosome 9	108,100,205	1	101,245,142	108,100,205	8,749
Chromosome 10	106,310,653	1	100,319,417	106,310,653	8,456
Chromosome 11	110,256,634	1	103,487,258	110,256,634	9,168
Chromosome 12	85,442,668	1	80,551,769	85,442,668	7,936
Chromosome 13	84,433,108	1	79,592,587	84,433,108	5,672
Chromosome 14	81,409,030	1	77,073,991	81,409,030	6,384
Chromosome 15	84,800,079	1	78,959,803	84,800,079	7,358
Chromosome 16	77,906,047	1	72,218,638	77,906,047	6,028
Chromosome 17	76,519,027	1	70,884,181	76,519,027	6,538
Chromosome 18	65,948,792	1	60,931,357	65,948,792	5,972
Chromosome 19	65,317,831	1	60,763,056	65,317,831	5,509
Chromosome 20	75,862,604	1	70,655,893	75,862,604	6,353
Chromosome 21	69,307,409	1	64,909,252	69,307,409	5,925
Chromosome 22	61,892,534	1	58,548,536	61,892,534	4,613
Chromosome 23	53,331,160	1	49,974,680	53,331,160	4,648
Chromosome 24	65,017,658	1	61,084,025	65,017,658	5,454
Chromosome 25	44,044,299	1	41,210,946	44,044,299	4,278
Chromosome 26	51,861,174	1	48,212,029	51,861,174	4,478
Chromosome 27	48,749,331	1	45,143,166	48,749,331	4,569
Chromosome 28	46,105,673	1	43,040,135	46,105,673	3,528
Chromosome 29	52,131,593	1	47,794,797	52,131,593	5,027
Chromosome X	88,516,652	1	82,216,486	88,516,652	10,873
Chromosome Y	39,421,065	1	15,026,305	39,421,065	35,041

Assembly

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Bos_indicus_1.0

See Genome Information for Bos indicus

Pathogen Detection Resources

There are 36 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Assembly Unit Name
Primary Assembly
non-nuclear