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PseHum1.0

Organism name:
Pseudopodoces humilis (Tibetan ground-tit)
BioSample:
SAMN02981490
BioProject:
PRJNA175930
Submitter:
Beijing Genomics Institute (BGI)-Shenzhen
Date:
2013/01/11
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000331425.1 (latest)
RefSeq assembly accession:
GCF_000331425.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
ANZD01
Assembly method:
SOAPdenovo v. 1.5
Genome coverage:
96.25x
Sequencing technology:
Illumina HiSeq

IDs: 524828 [UID] 524828 [GenBank] 777488 [RefSeq]

See Genome Information for Pseudopodoces humilis

History (Show revision history)

Comment

Global statistics

Total sequence length1,042,997,632
Total ungapped length1,030,030,436
Gaps between scaffolds0
Number of scaffolds5,406
Scaffold N5016,337,386
Scaffold L5016
Number of contigs27,052
Contig N50165,265
Contig L501,794
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)27,052

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,042,980,8235,4051,030,013,62716,337,38621,6460
MoleculeTotal
Length
Mitochondrion MT16,809