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ASM47854v1

Organism name:
Serratia plymuthica RVH1 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: RVH1
BioSample:
SAMN02440958
BioProject:
PRJNA175925
Submitter:
DOE Joint Genome Institute
Date:
2013/04/26
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000478545.1 (latest)
RefSeq assembly accession:
GCF_000478545.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ARWD01
Assembly method:
Velvet v. 1.1.05; ALLPATHS v. 39750; Phrap v. 4.24
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 69491 [UID] 821148 [GenBank] 821168 [RefSeq]

See Genome Information for Serratia plymuthica

There are 36 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 400057
Source DNA and Organism available from Daniel van der Lelie (vdlelied@rti.org)
Source DNA available from Daniel van der Lelie (vdlelied@rti.org)
Organism available from Daniel van der Lelie (vdlelied@rti.org)
Contacts: Daniel van der Lelie (vdlelied@rti.org)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole ... genome sequencing and draft assembly at JGI-PGF
Annotation by JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Serratia plymuthica RVH1
collection_date::Missing
lat_lon::Missing
depth::Missing
alt_elev::Missing
country::Missing
num_replicons::Missing
ref_biomaterial::Missing
biotic_relationship::Missing
rel_to_oxygen::Missing
isol_growth_condt::Missing
assembly::Velvet v. 1.1.05; ALLPATHS v. 39750; Phrap v. 4.24
finishing_strategy::Missing
environment::Missing
trophic_level::Missing
sequencing_meth::WGS
Funding Program::DOE-BESC 2008
##MIGS-Data-END##

Global statistics

Total sequence length5,514,320
Total ungapped length5,514,320
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000478555.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome ARWD01000001.1=NZ_ARWD01000001.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,514,320

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Serratia plymuthica RVH1Serratia plymuthica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900478125.1Serratia plymuthicatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900478125.1Serratia plymuthicatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.8088.3491.09
Best-match type97.8088.3491.09

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna