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CamDro3

Organism name:
Camelus dromedarius (Arabian camel)
Infraspecific name:
Breed: African
Isolate:
Drom800
Sex:
female
BioSample:
SAMN03252735
BioProject:
PRJNA269274
Submitter:
Vetmeduni Vienna
Date:
2019/10/07
Assembly level:
Chromosome
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_000803125.3 (latest)
RefSeq assembly accession:
GCF_000803125.2 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for GenBank version
WGS Project:
JWIN03
Assembly method:
ABySS v. 1.3.6; HiRise v. MAY-2017; PBJelly v. 15.8.24; Pilon v. 1.22; ABySS Sealer v. 2.0.2; HiRise v. MAY-2018; PBJelly v. 15.8.24; BBMAP-CallVariants v. 38.12; ABySS Sealer v. 2.1.0
Expected final version:
yes
Genome coverage:
65.0x
Sequencing technology:
Illumina HiSeq; Dovetail Hi-C and Chicago; PacBio Sequel

IDs: 4791361 [UID] 14240658 [GenBank] 14406718 [RefSeq]

See Genome Information for Camelus dromedarius

Pathogen Detection Resources

There are 7 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,169,346,739
Total ungapped length2,152,362,672
Gaps between scaffolds0
Number of scaffolds21,069
Scaffold N5070,369,702
Scaffold L5011
Number of contigs53,084
Contig N50236,391
Contig L502,637
Total number of chromosomes and plasmids37
Number of component sequences (WGS or clone)21,069

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000803135.3)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM016627.2=NC_044511.10
Chromosome 2CM016628.2=NC_044512.10
Chromosome 3CM016629.2=NC_044513.10
Chromosome 4CM016630.2=NC_044514.10
Chromosome 5CM016631.2=NC_044515.10
Chromosome 6CM016632.2=NC_044516.10
Chromosome 7CM016633.2=NC_044517.10
Chromosome 8CM016634.2=NC_044518.10
Chromosome 9CM016635.2=NC_044519.10
Chromosome 10CM016636.2=NC_044520.10
Chromosome 11CM016637.2=NC_044521.10
Chromosome 12CM016638.2=NC_044522.10
Chromosome 13CM016639.2=NC_044523.10
Chromosome 14CM016640.2=NC_044524.10
Chromosome 15CM016641.2=NC_044525.10
Chromosome 16CM016642.2=NC_044526.10
Chromosome 17CM016643.2=NC_044527.10
Chromosome 18CM016644.2=NC_044528.10
Chromosome 19CM016645.2=NC_044529.10
Chromosome 20CM016646.2=NC_044530.10
Chromosome 21CM016647.2=NC_044531.10
Chromosome 22CM016648.2=NC_044532.10
Chromosome 23CM016649.2=NC_044533.10
Chromosome 24CM016650.2=NC_044534.10
Chromosome 25CM016651.2=NC_044535.10
Chromosome 26CM016652.2=NC_044536.10
Chromosome 27CM016653.2=NC_044537.10
Chromosome 28CM016654.2=NC_044538.10
Chromosome 29CM016655.2=NC_044539.10
Chromosome 30CM016656.2=NC_044540.10
Chromosome 31CM016657.2=NC_044541.10
Chromosome 32CM016658.2=NC_044542.10
Chromosome 33CM016659.2=NC_044543.10
Chromosome 34CM016660.2=NC_044544.10
Chromosome 35CM016661.2=NC_044545.10
Chromosome 36CM016662.2=NC_044546.10
Chromosome XCM016663.2=NC_044547.10
unplacedn/an/an/a21,032

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All2,169,346,73921,0692,152,362,67270,369,70232,0150
Chromosome 1124,715,3421124,538,789124,715,3427660
Chromosome 2123,797,6241123,593,751123,797,6248800
Chromosome 3120,724,5601120,591,118120,724,5608620
Chromosome 468,336,600168,291,91668,336,6004900
Chromosome 597,468,828197,376,60497,468,8285650
Chromosome 697,504,898197,209,42997,504,8989050
Chromosome 786,662,405186,557,56886,662,4056000
Chromosome 881,230,863180,994,77481,230,8636800
Chromosome 977,266,745176,993,80677,266,7458060
Chromosome 1069,117,207168,482,27069,117,2078340
Chromosome 1185,443,229184,638,68685,443,2291,2140
Chromosome 1268,281,056167,917,98068,281,0568320
Chromosome 1369,976,089169,798,29769,976,0895830
Chromosome 1470,369,702170,288,61170,369,7025380
Chromosome 1557,412,934157,274,50057,412,9344760
Chromosome 1655,652,839155,448,60255,652,8396970
Chromosome 1752,130,679151,757,60652,130,6796860
Chromosome 1832,939,817132,805,34532,939,8174060
Chromosome 1945,218,158144,934,09545,218,1585420
Chromosome 2042,996,454142,797,52842,996,4545470
Chromosome 2131,123,794131,019,09131,123,7943130
Chromosome 2228,606,581128,513,29128,606,5813530
Chromosome 2334,524,780134,475,81134,524,7802960
Chromosome 2424,767,672124,613,80624,767,6723130
Chromosome 2541,725,625141,371,52141,725,6255980
Chromosome 2627,902,444127,872,08727,902,4442100
Chromosome 2728,600,766128,369,08228,600,7663860
Chromosome 2816,041,598115,993,29016,041,5981590
Chromosome 2925,940,089125,870,10325,940,0892520
Chromosome 3025,866,843125,767,35825,866,8432990
Chromosome 3117,406,307117,293,70817,406,3072510
Chromosome 3224,923,383124,841,13524,923,3832920
Chromosome 3323,363,481123,020,58423,363,4814300
Chromosome 3422,483,259122,460,89522,483,2592270
Chromosome 3526,327,613126,027,44526,327,6134770
Chromosome 367,066,69416,377,0637,066,6944800
Chromosome X121,484,8231121,022,596121,484,8231,2950
unplaced113,944,95821,032105,162,531215,56611,4750