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ASM164080v1

Organism name:
Lates calcarifer (barramundi perch)
Isolate:
ASB-BC8
Sex:
male
BioSample:
SAMN04026617
BioProject:
PRJNA294489
Submitter:
Temasek Life Sciences Laboratory
Date:
2016/05/09
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001640805.1 (replaced)
RefSeq assembly accession:
GCF_001640805.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
LLXD01
Assembly method:
HGAP v. JUN-2014; L_RNA_scaffolder v. JUN-2014
Expected final version:
no
Genome coverage:
90.0x
Sequencing technology:
PacBio

IDs: 738321 [UID] 3227578 [GenBank] 3497188 [RefSeq]

See Genome Information for Lates calcarifer

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length668,481,366
Total ungapped length668,469,904
Gaps between scaffolds0
Number of scaffolds3,808
Scaffold N501,191,366
Scaffold L50119
Number of contigs3,918
Contig N501,066,117
Contig L50139
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)3,808

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced668,464,8313,807668,453,3691,191,3661100
MoleculeTotal
Length
Mitochondrion MT16,535