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Source database (GenBank or RefSeq) File type

ASM283719v1

Organism name:

Enterobacterales bacterium CwR94 (enterobacteria)

Taxonomy check:

Inconclusive

Infraspecific name:

Strain: CwR94

BioSample:

SAMN07431076

BioProject:

PRJNA396688

Submitter:

University Of Reading

Date:

2017/12/12

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

genus undefined

GenBank assembly accession:

GCA_002837195.1 (latest)

RefSeq assembly accession:

GCF_002837195.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

NVXY01

Assembly method:

SPAdes v. 3.10.1

Expected final version:

Genome coverage:

219.0x

Sequencing technology:

Illumina HiSeq

IDs: 1489011 [UID] 5774348 [GenBank] 5795928 [RefSeq]

See Genome Information for Enterobacterales bacterium CwR94

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002837195.1	=	GCF_002837195.1	ASM283719v1	Scaffold	Latest GenBank, RefSeq suppressed

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Robert Jackson, School of Biological Sciences, University of Reading, Whiteknights, Reading, RG6 6AJ, UK.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::09/15/2017 13:30:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,258
CDS (total)::4,181
Genes (coding)::4,134
CDS (coding)::4,134
Genes (RNA)::77
rRNAs::4, 1, 1 (5S, 16S, 23S)
complete rRNAs::4, 1, 1 (5S, 16S, 23S)
partial rRNAs:: 
tRNAs::63
ncRNAs::8
Pseudo Genes (total)::47
Pseudo Genes (ambiguous residues)::0 of 47
Pseudo Genes (frameshifted)::16 of 47
Pseudo Genes (incomplete)::27 of 47
Pseudo Genes (internal stop)::13 of 47
Pseudo Genes (multiple problems)::7 of 47
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,483,417
Total ungapped length	4,482,115
Gaps between scaffolds	0
Number of scaffolds	26
Scaffold N50	455,206
Scaffold L50	4
Number of contigs	35
Contig N50	296,049
Contig L50	5
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	35

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	81.28	11.56	10.51

Assembly

Genome Assembly

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ASM283719v1

See Genome Information for Enterobacterales bacterium CwR94

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

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Average Nucleotide Identity (ANI) data

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