U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM394559v1

Organism name:
Pipra filicauda (Wire-tailed manakin)
Isolate:
LSUMZ 115617
Sex:
male
BioSample:
SAMN08774045
BioProject:
PRJNA445296
Submitter:
Smithsonian Institution
Date:
2018/12/14
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003945595.1 (replaced)
RefSeq assembly accession:
GCF_003945595.1 (replaced)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PYIH01
Assembly method:
MaSuRCA v. 3.2.2
Expected final version:
yes
Genome coverage:
90.0x
Sequencing technology:
Illumina HiSeq; PacBio

IDs: 2168221 [UID] 8090278 [GenBank] 8188698 [RefSeq]

See Genome Information for Pipra filicauda

History (Show revision history)

Comment

Global statistics

Total sequence length1,110,963,465
Total ungapped length1,110,924,512
Gaps between scaffolds0
Number of scaffolds3,744
Scaffold N501,695,450
Scaffold L50189
Number of contigs3,843
Contig N501,585,402
Contig L50201
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)3,744

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,110,963,4653,7441,110,924,5121,695,450990