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Source database (GenBank or RefSeq) File type

UCI_PerLeu_2.1

Organism name:

Peromyscus leucopus (white-footed mouse)

Infraspecific name:

Breed: LL Stock

Sex:

female

BioSample:

SAMN03488028

BioProject:

PRJNA281425

Submitter:

University of California Irvine

Date:

2020/10/02

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_004664715.2 (latest)

RefSeq assembly accession:

GCF_004664715.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

NMRJ02

Assembly method:

custom method described in paper v. 02/14/20

Expected final version:

yes

Genome coverage:

60.0x

Sequencing technology:

Illumina; PacBio; HiC-Illumina

IDs: 8220561 [UID] 22448328 [GenBank] 22709168 [RefSeq]

See Genome Information for Peromyscus leucopus

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_004664715.2	≠	GCF_004664715.2	UCI_PerLeu_2.1	Chromosome	Latest GenBank, Latest RefSeq
GCA_004664715.1	≠	GCF_004664715.1	Pero_0.1	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	2,475,180,836
Total ungapped length	2,474,052,459
Gaps between scaffolds	0
Number of scaffolds	1,857
Scaffold N50	114,273,790
Scaffold L50	9
Number of contigs	4,148
Contig N50	3,487,364
Contig L50	198
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	1,857

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM026041.1	=	NC_051063.1	0
Chromosome 2	CM026042.1	=	NC_051064.1	0
Chromosome 3	CM026043.1	=	NC_051065.1	0
Chromosome 4	CM026044.1	=	NC_051066.1	0
Chromosome 5	CM026045.1	=	NC_051067.1	0
Chromosome 6	CM026046.1	=	NC_051068.1	0
Chromosome 7	CM026047.1	=	NC_051069.1	0
Chromosome 9	CM026048.1	=	NC_051070.1	0
Chromosome 10	CM026049.1	=	NC_051071.1	0
Chromosome 11	CM026050.1	=	NC_051072.1	0
Chromosome 12	CM026051.1	=	NC_051073.1	0
Chromosome 13	CM026052.1	=	NC_051074.1	0
Chromosome 14	CM026053.1	=	NC_051075.1	0
Chromosome 15	CM026054.1	=	NC_051076.1	0
Chromosome 17	CM026055.1	=	NC_051077.1	0
Chromosome 18	CM026056.1	=	NC_051078.1	0
Chromosome 19	CM026057.1	=	NC_051079.1	0
Chromosome 20	CM026058.1	=	NC_051080.1	0
Chromosome 22	CM026059.1	=	NC_051081.1	0
Chromosome 23	CM026060.1	=	NC_051082.1	0
Chromosome X	CM026061.1	=	NC_051083.1	0
Chromosome 16_21	CM026062.1	=	NC_051084.1	0
Chromosome 8a	CM026063.1	=	NC_051085.1	0
Chromosome 8b	CM026064.1	=	NC_051086.1	0
unplaced	n/a	n/a	n/a	1,832

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,475,164,510	1,856	2,474,036,133	114,273,790	2,291
Chromosome 1	193,658,164	1	193,511,423	193,658,164	297
Chromosome 2	154,649,009	1	154,592,687	154,649,009	116
Chromosome 3	159,738,685	1	159,672,348	159,738,685	137
Chromosome 4	151,869,327	1	151,798,521	151,869,327	145
Chromosome 5	145,700,154	1	145,645,607	145,700,154	110
Chromosome 6	133,087,326	1	133,024,443	133,087,326	119
Chromosome 7	118,845,208	1	118,803,608	118,845,208	84
Chromosome 9	114,273,790	1	114,230,290	114,273,790	87
Chromosome 10	93,642,674	1	93,606,608	93,642,674	74
Chromosome 11	69,407,300	1	69,380,676	69,407,300	46
Chromosome 12	83,119,451	1	83,076,523	83,119,451	92
Chromosome 13	66,178,483	1	66,153,254	66,178,483	55
Chromosome 14	91,293,109	1	91,256,124	91,293,109	76
Chromosome 15	90,487,634	1	90,449,413	90,487,634	80
Chromosome 17	56,153,843	1	56,130,343	56,153,843	47
Chromosome 18	47,548,717	1	47,534,217	47,548,717	29
Chromosome 19	84,080,322	1	84,053,710	84,080,322	55
Chromosome 20	65,585,891	1	65,567,866	65,585,891	39
Chromosome 22	56,493,492	1	56,439,992	56,493,492	107
Chromosome 23	46,490,564	1	46,450,554	46,490,564	81
Chromosome X	138,232,706	1	138,126,507	138,232,706	214
Chromosome 16_21	79,846,141	1	79,821,840	79,846,141	53
Chromosome 8a	58,348,646	1	58,329,646	58,348,646	38
Chromosome 8b	106,604,048	1	106,553,949	106,604,048	101
unplaced	69,829,826	1,832	69,825,984	100,000	9

Assembly

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UCI_PerLeu_2.1

See Genome Information for Peromyscus leucopus

Pathogen Detection Resources

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear