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Pero_0.1

Organism name:
Peromyscus leucopus (white-footed mouse)
Infraspecific name:
Breed: LL Stock
Sex:
female
BioSample:
SAMN03488028
BioProject:
PRJNA281425
Submitter:
University of California Irvine
Date:
2019/04/05
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_004664715.1 (replaced)
RefSeq assembly accession:
GCF_004664715.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
NMRJ01
Assembly method:
Falcon v. 0.2JASM; DBG2OLC v. GitHub commit f7169fb; Platanus v. 1.2.1; quickmerge v. Github commit 1ff691f
Expected final version:
yes
Genome coverage:
43.0x
Sequencing technology:
PacBio; Illumina HiSeq

IDs: 2507711 [UID] 9150458 [GenBank] 9346258 [RefSeq]

See Genome Information for Peromyscus leucopus

History (Show revision history)

Comment

Global statistics

Total sequence length2,474,071,336
Total ungapped length2,474,052,493
Gaps between scaffolds0
Number of scaffolds1,763
Scaffold N504,476,954
Scaffold L50162
Number of contigs1,834
Contig N504,102,727
Contig L50172
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1,763

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,474,055,0101,7622,474,036,1674,476,954710
MoleculeTotal
Length
Mitochondrion MT16,326