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ASM622763v1

Organism name:
Pasteurellaceae bacterium USgator41 (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: USgator41
BioSample:
SAMN11891222
BioProject:
PRJNA545139
Submitter:
University of Copenhagen
Date:
2019/06/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • genus undefined
GenBank assembly accession:
GCA_006227635.1 (latest)
RefSeq assembly accession:
GCF_006227635.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
VDGW01
Assembly method:
CLC Genomics Workbench v. 7.8.1
Expected final version:
yes
Genome coverage:
64x
Sequencing technology:
Illumina MiSeq

IDs: 3387491 [UID] 11098038 [GenBank] 11386648 [RefSeq]

See Genome Information for Pasteurellaceae bacterium USgator41

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/05/2019 10:54:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.8
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,579
CDSs (total)::2,524
Genes (coding)::2,494
CDSs (with protein)::2,494
Genes (RNA)::55
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::1 (23S)
tRNAs::49
ncRNAs::3
Pseudo Genes (total)::30
CDSs (without protein)::30
Pseudo Genes (ambiguous residues)::0 of 30
Pseudo Genes (frameshifted)::11 of 30
Pseudo Genes (incomplete)::14 of 30
Pseudo Genes (internal stop)::7 of 30
Pseudo Genes (multiple problems)::2 of 30
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,670,511
Total ungapped length2,670,511
Number of contigs222
Contig N5025,897
Contig L5033
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)222

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,670,5112222,670,51125,89700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pasteurellaceae bacterium USgator41Pasteurellaceae bacterium USgator41

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004342725.1Testudinibacter aquariustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.4089.5588.03

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelineage-matchna