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Source database (GenBank or RefSeq) File type

ASM1463336v1

Organism name:

Diospyros lotus (eudicots)

Infraspecific name:

Cultivar: Yz01

BioSample:

SAMN15573978

BioProject:

PRJNA646788

Submitter:

BEIJING ACADEMY OF FORESTRY AND POMOLOGY SCIENCES

Date:

2020/09/21

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_014633365.1 (latest)

RefSeq assembly accession:

GCF_014633365.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

JACRTX01

Assembly method:

canu v. 1.5

Expected final version:

yes

Genome coverage:

167x

Sequencing technology:

PacBio Sequel

IDs: 8125791 [UID] 22229168 [GenBank] 37442508 [RefSeq]

See Genome Information for Diospyros lotus

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_014633365.1	≠	GCF_014633365.1	ASM1463336v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	630,256,098
Total ungapped length	630,192,332
Gaps between scaffolds	0
Number of scaffolds	43
Scaffold N50	42,671,757
Scaffold L50	7
Number of contigs	649
Contig N50	2,380,091
Contig L50	78
Total number of chromosomes and plasmids	16
Number of component sequences (WGS or clone)	43

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM025690.1	=	NC_068338.1	0
Chromosome 2	CM025691.1	=	NC_068339.1	0
Chromosome 3	CM025692.1	=	NC_068340.1	0
Chromosome 4	CM025693.1	=	NC_068341.1	0
Chromosome 5	CM025694.1	=	NC_068342.1	0
Chromosome 6	CM025695.1	=	NC_068343.1	0
Chromosome 7	CM025696.1	=	NC_068344.1	0
Chromosome 8	CM025697.1	=	NC_068345.1	0
Chromosome 9	CM025698.1	=	NC_068346.1	0
Chromosome 10	CM025699.1	=	NC_068347.1	0
Chromosome 11	CM025700.1	=	NC_068348.1	0
Chromosome 12	CM025701.1	=	NC_068349.1	0
Chromosome 13	CM025702.1	=	NC_068350.1	0
Chromosome 14	CM025703.1	=	NC_068351.1	0
Chromosome 15	CM025704.1	=	NC_068352.1	0
unplaced	n/a	n/a	n/a	27

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	630,098,508	42	630,034,742	42,671,757	606
Chromosome 1	54,509,687	1	54,505,287	54,509,687	44
Chromosome 2	47,758,052	1	47,754,652	47,758,052	34
Chromosome 3	42,671,757	1	42,668,357	42,671,757	34
Chromosome 4	45,053,450	1	45,049,150	45,053,450	43
Chromosome 5	43,101,168	1	43,096,568	43,101,168	46
Chromosome 6	46,716,196	1	46,710,696	46,716,196	55
Chromosome 7	38,478,150	1	38,475,450	38,478,150	27
Chromosome 8	42,756,978	1	42,752,178	42,756,978	48
Chromosome 9	38,263,550	1	38,259,550	38,263,550	40
Chromosome 10	36,093,716	1	36,091,716	36,093,716	20
Chromosome 11	33,399,393	1	33,396,793	33,399,393	26
Chromosome 12	38,824,857	1	38,821,457	38,824,857	34
Chromosome 13	40,768,047	1	40,764,847	40,768,047	32
Chromosome 14	36,294,965	1	36,292,465	36,294,965	25
Chromosome 15	34,286,129	1	34,282,729	34,286,129	34
unplaced	11,122,413	27	11,112,847	7,365,342	64

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ASM1463336v1

See Genome Information for Diospyros lotus

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear