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Source database (GenBank or RefSeq) File type

AmerM5.1

Organism name:

Anopheles merus (mosquitos)

Infraspecific name:

Strain: MAF

Sex:

male

BioSample:

SAMN14825642

BioProject:

PRJNA660041

Submitter:

Virginia Tech

Date:

2021/03/24

Release type:

minor

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_017562075.2 (latest)

RefSeq assembly accession:

GCF_017562075.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JADFFO01

Assembly method:

Canu v. 1.7.1

Expected final version:

yes

Genome coverage:

50x

Sequencing technology:

PacBio Sequel

IDs: 9934661 [UID] 26469068 [GenBank] 27070588 [RefSeq]

See Genome Information for Anopheles merus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_017562075.2	≠	GCF_017562075.2	AmerM5.1	Chromosome	Latest GenBank, Latest RefSeq
GCA_017562075.1	n/a	n/a	AmerM5	Chromosome	Replaced GenBank

Comment

In April 2021 102 sequences were suppressed because they are contaminants

Global statistics

Total sequence length	294,379,759
Total ungapped length	294,352,659
Gaps between scaffolds	0
Number of scaffolds	1,328
Scaffold N50	50,316,797
Scaffold L50	3
Number of contigs	1,599
Contig N50	2,729,089
Contig L50	28
Total number of chromosomes and plasmids	6
Number of component sequences (WGS or clone)	1,328

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome X	CM029762.1	=	NC_054081.1	0
Chromosome 2R	CM029764.1	=	NC_054082.1	0
Chromosome 2L	CM029763.1	=	NC_054083.1	0
Chromosome 3R	CM029766.1	=	NC_054084.1	0
Chromosome 3L	CM029765.1	=	NC_054085.1	0
unplaced	n/a	n/a	n/a	1,322

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	294,364,394	1,327	294,337,294	50,316,797	271
Chromosome X	26,568,755	1	26,557,055	26,568,755	117
Chromosome 2R	63,277,359	1	63,271,759	63,277,359	56
Chromosome 2L	54,243,648	1	54,240,548	54,243,648	31
Chromosome 3R	50,316,797	1	50,313,797	50,316,797	30
Chromosome 3L	39,960,157	1	39,956,457	39,960,157	37
unplaced	59,997,678	1,322	59,997,678	54,448	0

Assembly

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AmerM5.1

See Genome Information for Anopheles merus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear