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Source database (GenBank or RefSeq) File type

RBS_HiC_50CHRs

Organism name:

Xyrauchen texanus (razorback sucker)

Isolate:

HMW12.3.18

BioSample:

SAMN31066171

BioProject:

PRJNA885108

Submitter:

University at Buffalo

Date:

2022/10/26

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_025860055.1 (latest)

RefSeq assembly accession:

GCF_025860055.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAOTQA01

Assembly method:

Flye v. 2.9-b1768; Kraken v. 2.0.8-beta; Juicer v. 1.6

Expected final version:

yes

Genome coverage:

59.3x

Sequencing technology:

Oxford Nanopore GridION

IDs: 14223331 [UID] 36958368 [GenBank] 37377068 [RefSeq]

See Genome Information for Xyrauchen texanus

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_025860055.1	≠	GCF_025860055.1	RBS_HiC_50CHRs	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	2,186,823,573
Total ungapped length	2,185,887,073
Gaps between scaffolds	0
Number of scaffolds	1,746
Scaffold N50	43,767,000
Scaffold L50	22
Number of contigs	3,619
Contig N50	5,095,822
Contig L50	113
Total number of chromosomes and plasmids	51
Number of component sequences (WGS or clone)	1,746

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM047299.1	=	NC_068276.1	0
Chromosome 2	CM047300.1	=	NC_068277.1	0
Chromosome 3	CM047301.1	=	NC_068278.1	0
Chromosome 4	CM047302.1	=	NC_068279.1	0
Chromosome 5	CM047303.1	=	NC_068280.1	0
Chromosome 6	CM047304.1	=	NC_068281.1	0
Chromosome 7	CM047305.1	=	NC_068282.1	0
Chromosome 8	CM047306.1	=	NC_068283.1	0
Chromosome 9	CM047307.1	=	NC_068284.1	0
Chromosome 10	CM047308.1	=	NC_068285.1	0
Chromosome 11	CM047309.1	=	NC_068286.1	0
Chromosome 12	CM047310.1	=	NC_068287.1	0
Chromosome 13	CM047311.1	=	NC_068288.1	0
Chromosome 14	CM047312.1	=	NC_068289.1	0
Chromosome 15	CM047313.1	=	NC_068290.1	0
Chromosome 16	CM047314.1	=	NC_068291.1	0
Chromosome 17	CM047315.1	=	NC_068292.1	0
Chromosome 18	CM047316.1	=	NC_068293.1	0
Chromosome 19	CM047317.1	=	NC_068294.1	0
Chromosome 20	CM047318.1	=	NC_068295.1	0
Chromosome 21	CM047319.1	=	NC_068296.1	0
Chromosome 22	CM047320.1	=	NC_068297.1	0
Chromosome 23	CM047321.1	=	NC_068298.1	0
Chromosome 24	CM047322.1	=	NC_068299.1	0
Chromosome 25	CM047323.1	=	NC_068300.1	0
Chromosome 26	CM047324.1	=	NC_068301.1	0
Chromosome 27	CM047325.1	=	NC_068302.1	0
Chromosome 28	CM047326.1	=	NC_068303.1	0
Chromosome 29	CM047327.1	=	NC_068304.1	0
Chromosome 30	CM047328.1	=	NC_068305.1	0
Chromosome 31	CM047329.1	=	NC_068306.1	0
Chromosome 32	CM047330.1	=	NC_068307.1	0
Chromosome 33	CM047331.1	=	NC_068308.1	0
Chromosome 34	CM047332.1	=	NC_068309.1	0
Chromosome 35	CM047333.1	=	NC_068310.1	0
Chromosome 36	CM047334.1	=	NC_068311.1	0
Chromosome 37	CM047335.1	=	NC_068312.1	0
Chromosome 38	CM047336.1	=	NC_068313.1	0
Chromosome 39	CM047337.1	=	NC_068314.1	0
Chromosome 40	CM047338.1	=	NC_068315.1	0
Chromosome 41	CM047339.1	=	NC_068316.1	0
Chromosome 42	CM047340.1	=	NC_068317.1	0
Chromosome 43	CM047341.1	=	NC_068318.1	0
Chromosome 44	CM047342.1	=	NC_068319.1	0
Chromosome 45	CM047343.1	=	NC_068320.1	0
Chromosome 46	CM047344.1	=	NC_068321.1	0
Chromosome 47	CM047345.1	=	NC_068322.1	0
Chromosome 48	CM047346.1	=	NC_068323.1	0
Chromosome 49	CM047347.1	=	NC_068324.1	0
Chromosome 50	CM047348.1	=	NC_068325.1	0
unplaced	n/a	n/a	n/a	1,695

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,186,806,939	1,745	2,185,870,439	43,767,000	1,873
Chromosome 1	67,301,073	1	67,260,573	67,301,073	81
Chromosome 2	64,531,000	1	64,514,000	64,531,000	34
Chromosome 3	61,068,056	1	61,046,056	61,068,056	44
Chromosome 4	57,219,779	1	57,207,779	57,219,779	24
Chromosome 5	54,033,747	1	54,007,247	54,033,747	53
Chromosome 6	51,460,607	1	51,443,107	51,460,607	35
Chromosome 7	51,341,132	1	51,319,632	51,341,132	43
Chromosome 8	50,645,032	1	50,619,532	50,645,032	51
Chromosome 9	49,601,178	1	49,580,178	49,601,178	42
Chromosome 10	48,589,407	1	48,532,907	48,589,407	113
Chromosome 11	48,499,061	1	48,472,561	48,499,061	53
Chromosome 12	48,329,000	1	48,305,000	48,329,000	48
Chromosome 13	47,744,958	1	47,725,458	47,744,958	39
Chromosome 14	47,519,117	1	47,502,117	47,519,117	34
Chromosome 15	45,978,149	1	45,962,649	45,978,149	31
Chromosome 16	45,819,617	1	45,801,117	45,819,617	37
Chromosome 17	45,765,774	1	45,752,274	45,765,774	27
Chromosome 18	45,535,019	1	45,519,519	45,535,019	31
Chromosome 19	45,533,979	1	45,512,979	45,533,979	42
Chromosome 20	44,035,943	1	44,025,943	44,035,943	20
Chromosome 21	44,036,500	1	44,019,000	44,036,500	35
Chromosome 22	43,767,000	1	43,751,000	43,767,000	32
Chromosome 23	43,755,000	1	43,745,000	43,755,000	20
Chromosome 24	43,119,365	1	43,100,365	43,119,365	38
Chromosome 25	42,781,253	1	42,755,253	42,781,253	52
Chromosome 26	42,762,869	1	42,734,869	42,762,869	56
Chromosome 27	42,673,000	1	42,665,000	42,673,000	16
Chromosome 28	42,303,713	1	42,282,213	42,303,713	43
Chromosome 29	42,276,806	1	42,266,806	42,276,806	20
Chromosome 30	42,184,291	1	42,170,791	42,184,291	27
Chromosome 31	41,958,500	1	41,939,000	41,958,500	39
Chromosome 32	41,650,226	1	41,635,226	41,650,226	30
Chromosome 33	40,978,000	1	40,967,000	40,978,000	22
Chromosome 34	40,508,500	1	40,484,000	40,508,500	49
Chromosome 35	40,181,522	1	40,162,522	40,181,522	38
Chromosome 36	40,156,385	1	40,145,385	40,156,385	22
Chromosome 37	39,809,261	1	39,796,261	39,809,261	26
Chromosome 38	38,304,500	1	38,288,000	38,304,500	33
Chromosome 39	38,019,406	1	38,004,406	38,019,406	30
Chromosome 40	37,660,037	1	37,641,037	37,660,037	38
Chromosome 41	35,733,618	1	35,718,118	35,733,618	31
Chromosome 42	34,640,078	1	34,619,578	34,640,078	41
Chromosome 43	33,489,453	1	33,476,953	33,489,453	25
Chromosome 44	33,062,547	1	33,048,047	33,062,547	29
Chromosome 45	28,988,505	1	28,969,505	28,988,505	38
Chromosome 46	28,458,375	1	28,445,375	28,458,375	26
Chromosome 47	27,616,071	1	27,604,071	27,616,071	24
Chromosome 48	27,564,625	1	27,542,625	27,564,625	44
Chromosome 49	26,774,625	1	26,760,625	26,774,625	28
Chromosome 50	22,949,794	1	22,932,794	22,949,794	34
unplaced	38,091,486	1,695	38,088,986	33,977	5

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RBS_HiC_50CHRs

See Genome Information for Xyrauchen texanus

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear