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fErpCal1.1

Organism name:
Erpetoichthys calabaricus (reedfish)
BioSample:
SAMEA104026374
BioProject:
PRJEB31579
Submitter:
SC
Date:
2019/03/26
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_900747795.2 (replaced)
RefSeq assembly accession:
GCF_900747795.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
CAADRL01
Genome coverage:
51x
Linked assembly:
GCA_900700845.2 (alternate pseudohaplotype of diploid)

IDs: 2489781 [UID] 9116158 [GenBank] 9257958 [RefSeq]

See Genome Information for Erpetoichthys calabaricus

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,811,038,701
Total ungapped length3,572,744,093
Gaps between scaffolds0
Number of scaffolds1,885
Scaffold N50199,226,436
Scaffold L507
Number of contigs7,498
Contig N501,143,051
Contig L50868
Total number of chromosomes and plasmids19
Number of component sequences (WGS or clone)1,885

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_900747794.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1LR536432.1=NC_041394.12
Chromosome 2LR536433.1=NC_041395.15
Chromosome 3LR536434.1=NC_041396.11
Chromosome 4LR536435.1=NC_041397.16
Chromosome 5LR536436.1=NC_041398.15
Chromosome 6LR536437.1=NC_041399.12
Chromosome 7LR536438.1=NC_041400.10
Chromosome 8LR536439.1=NC_041401.10
Chromosome 9LR536440.1=NC_041402.10
Chromosome 10LR536441.1=NC_041403.10
Chromosome 11LR536442.1=NC_041404.10
Chromosome 12LR536443.1=NC_041405.10
Chromosome 13LR536444.1=NC_041406.12
Chromosome 14LR536445.1=NC_041407.10
Chromosome 15LR536446.1=NC_041408.10
Chromosome 16LR536447.1=NC_041409.10
Chromosome 17LR536448.1=NC_041410.10
Chromosome 18LR536449.1=NC_041411.10
unplacedn/an/an/a1,843

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule3,811,022,0271,8843,572,727,419199,226,4365,6130
Chromosome 1AllAssembled moleculeUnlocalized scaffolds357,777,291350,098,6117,678,680312332,548,549328,090,8314,457,718350,098,611350,098,6114,163,55944042317000
Chromosome 2AllAssembled moleculeUnlocalized scaffolds349,406,900332,461,05316,945,847615323,988,100310,752,70313,235,397332,461,053332,461,0533,995,87043239933000
Chromosome 3AllAssembled moleculeUnlocalized scaffolds312,125,791309,313,7022,812,089211286,998,137285,340,2811,657,856309,313,702309,313,7022,812,0894364297000
Chromosome 4AllAssembled moleculeUnlocalized scaffolds326,283,616293,870,03332,413,583716306,206,804282,767,91023,438,894293,870,033293,870,0336,189,55745737879000
Chromosome 5AllAssembled moleculeUnlocalized scaffolds247,998,699232,056,43115,942,268615231,455,811220,984,97810,470,833232,056,431232,056,4312,772,68034230636000
Chromosome 6AllAssembled moleculeUnlocalized scaffolds216,311,125209,933,2856,377,840312203,162,956198,008,1845,154,772209,933,285209,933,2853,213,18628026614000
Chromosome 7Assembled molecule199,226,4361187,336,947199,226,4362840
Chromosome 8Assembled molecule197,106,4061189,510,732197,106,4062600
Chromosome 9Assembled molecule195,124,6331184,273,439195,124,6332790
Chromosome 10Assembled molecule172,872,4541167,188,721172,872,4542220
Chromosome 11Assembled molecule165,569,7541155,869,887165,569,7542380
Chromosome 12Assembled molecule163,428,5981158,255,434163,428,5981980
Chromosome 13AllAssembled moleculeUnlocalized scaffolds146,000,024141,079,6454,920,379312139,784,624135,067,2844,717,340141,079,645141,079,6452,462,9212021939000
Chromosome 14Assembled molecule111,844,2461106,061,130111,844,2461350
Chromosome 15Assembled molecule103,228,439197,504,817103,228,4391580
Chromosome 16Assembled molecule102,189,247198,740,383102,189,2471270
Chromosome 17Assembled molecule100,832,283190,583,056100,832,2831410
Chromosome 18Assembled molecule88,365,115185,991,89588,365,115880
unplacedAssembled molecule255,330,9701,843227,265,997436,4768940
MoleculeTotal
Length
Mitochondrion MT16,674