Bacteria (ID 188943) - BioProject

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Accession: PRJNA188943 ID: 188943

Bacteria

Bacterial 23S Ribosomal RNA RefSeq Targeted Loci Project

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This project is a component of the RefSeq Targeted Loci Project

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9 additional projects are components of the RefSeq Targeted Loci Project.

The 23S ribosomal RNA targeted loci project is the result of an international collaboration between a number of ribosomal RNA databases and NCBI to provide a curated and comprehensive set of complete and near full length Reference Sequence records for phylogenetic and evolutionary analyses. More...

Accession	PRJNA188943
Data Type	RefSeq Targeted Locus (Loci)
Scope	Multiisolate
Publications (total 858) Less...	Watanabe T et al., "Complete genomes of freshwater sulfur oxidizers Sulfuricella denitrificans skB26 and Sulfuritalea hydrogenivorans sk43H: genetic insights into the sulfur oxidation pathway of betaproteobacteria.", Syst Appl Microbiol, 2014 Sep;37(6):387-95 More... Watanabe T et al., "Complete genomes of freshwater sulfur oxidizers Sulfuricella denitrificans skB26 and Sulfuritalea hydrogenivorans sk43H: genetic insights into the sulfur oxidation pathway of betaproteobacteria.", Syst Appl Microbiol, 2014 Sep;37(6):387-95 Chan KG et al., "Complete Genome Sequence of Pandoraea pnomenusa 3kgm, a Quorum-Sensing Strain Isolated from a Former Landfill Site.", Genome Announc, 2014 May 8;2(3) Dueholm MS et al., "Complete Genome Sequences of Pseudomonas monteilii SB3078 and SB3101, Two Benzene-, Toluene-, and Ethylbenzene-Degrading Bacteria Used for Bioaugmentation.", Genome Announc, 2014 May 29;2(3) Dueholm MS et al., "Complete Genome of Rhodococcus pyridinivorans SB3094, a Methyl-Ethyl-Ketone-Degrading Bacterium Used for Bioaugmentation.", Genome Announc, 2014 May 29;2(3) Bao Y et al., "Complete Genome Sequence of Dyella jiangningensis Strain SBZ3-12, Isolated from the Surfaces of Weathered Rock.", Genome Announc, 2014 May 15;2(3) Machado VS et al., "Complete Genome Sequence of Trueperella pyogenes, an Important Opportunistic Pathogen of Livestock.", Genome Announc, 2014 May 1;2(2) Ancora M et al., "Complete Genome Sequence of a Brucella ceti ST26 Strain Isolated from a Striped Dolphin (Stenella coeruleoalba) on the Coast of Italy.", Genome Announc, 2014 Mar 6;2(2) Glaub A et al., "Complete Genome Sequence of Corynebacterium falsenii DSM 44353 To Study the Evolution of Corynebacterium Cluster 3 Species.", Genome Announc, 2014 Mar 6;2(2) Sprague LD et al., "Genome Sequence of Yersinia similis Y228T, a Member of the Yersinia pseudotuberculosis Complex.", Genome Announc, 2014 Mar 27;2(2) Wang S et al., "Whole Genome Sequence of the Probiotic Strain Lactobacillus paracasei N1115, Isolated from Traditional Chinese Fermented Milk.", Genome Announc, 2014 Mar 13;2(2) Wang X et al., "Complete Genome Sequence of Magnetospirillum gryphiswaldense MSR-1.", Genome Announc, 2014 Mar 13;2(2) Lebedinsky AV et al., "Analysis of the complete genome of Fervidococcus fontis confirms the distinct phylogenetic position of the order Fervidicoccales and suggests its environmental function.", Extremophiles, 2014 Mar;18(2):295-309 Sachse K et al., "Evidence for the existence of two new members of the family Chlamydiaceae and proposal of Chlamydia avium sp. nov. and Chlamydia gallinacea sp. nov.", Syst Appl Microbiol, 2014 Mar;37(2):79-88 Chang TH et al., "Molecular evolution of the substrate utilization strategies and putative virulence factors in mosquito-associated Spiroplasma species.", Genome Biol Evol, 2014 Mar;6(3):500-9 Xie JB et al., "Comparative genomic analysis of N2-fixing and non-N2-fixing Paenibacillus spp.: organization, evolution and expression of the nitrogen fixation genes.", PLoS Genet, 2014 Mar;10(3):e1004231 Poehlein A et al., "Complete Genome Sequence of Amino Acid-Utilizing Eubacterium acidaminophilum al-2 (DSM 3953).", Genome Announc, 2014 Jun 12;2(3) Luo Q et al., "Insights into the microbial degradation of rubber and gutta-percha by analysis of the complete genome of Nocardia nova SH22a.", Appl Environ Microbiol, 2014 Jul;80(13):3895-907 Ku C et al., "Complete Genome Sequence of Spiroplasma apis B31T (ATCC 33834), a Bacterium Associated with May Disease of Honeybees (Apis mellifera).", Genome Announc, 2014 Jan 9;2(1) Thirumalapura NR et al., "Complete Genome Sequence of Ehrlichia muris Strain AS145T, a Model Monocytotropic Ehrlichia Strain.", Genome Announc, 2014 Jan 30;2(1) Deshuillers PL et al., "Complete Genome Sequence of Mycoplasma ovis Strain Michigan, a Hemoplasma of Sheep with Two Distinct 16S rRNA Genes.", Genome Announc, 2014 Jan 30;2(1) Martineau C et al., "Complete Genome Sequence of Hyphomicrobium nitrativorans Strain NL23, a Denitrifying Bacterium Isolated from Biofilm of a Methanol-Fed Denitrification System Treating Seawater at the Montreal Biodome.", Genome Announc, 2014 Jan 16;2(1) Sait M et al., "Genome sequencing and comparative analysis of three Chlamydia pecorum strains associated with different pathogenic outcomes.", BMC Genomics, 2014 Jan 14;15(1):23 Oakeson KF et al., "Genome degeneration and adaptation in a nascent stage of symbiosis.", Genome Biol Evol, 2014 Jan;6(1):76-93 Calcutt MJ et al., "Complete Genome Sequence of Mycoplasma bovoculi Strain M165/69T (ATCC 29104).", Genome Announc, 2014 Feb 20;2(1) Barbour AG et al., "Genome Sequence of Borrelia parkeri, an Agent of Enzootic Relapsing Fever in Western North America.", Genome Announc, 2014 Feb 13;2(1) Harhay GP et al., "Complete Closed Genome Sequences of Three Bibersteinia trehalosi Nasopharyngeal Isolates from Cattle with Shipping Fever.", Genome Announc, 2014 Feb 13;2(1) Harhay GP et al., "Complete Closed Genome Sequences of Four Mannheimia varigena Isolates from Cattle with Shipping Fever.", Genome Announc, 2014 Feb 13;2(1) Dziewit L et al., "Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids.", BMC Genomics, 2014 Feb 12;15:124 Wulff NA et al., "The complete genome sequence of 'Candidatus Liberibacter americanus', associated with Citrus huanglongbing.", Mol Plant Microbe Interact, 2014 Feb;27(2):163-76 Leclercq S et al., "Phylogenomics of "Candidatus Hepatoplasma crinochetorum," a lineage of mollicutes associated with noninsect arthropods.", Genome Biol Evol, 2014 Feb;6(2):407-15 Rudder S et al., "Genome sequence of Ensifer adhaerens OV14 provides insights into its ability as a novel vector for the genetic transformation of plant genomes.", BMC Genomics, 2014 Apr 7;15:268 Djukic M et al., "How to kill the honey bee larva: genomic potential and virulence mechanisms of Paenibacillus larvae.", PLoS One, 2014;9(3):e90914 Brown SD et al., "Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia.", Biotechnol Biofuels, 2014;7:40 Toh H et al., "Complete Genome Sequence of the Equol-Producing Bacterium Adlercreutzia equolifaciens DSM 19450T.", Genome Announc, 2013 Sep 19;1(5) Hue F et al., "Chromosome Sequence of Borrelia miyamotoi, an Uncultivable Tick-Borne Agent of Human Infection.", Genome Announc, 2013 Sep 12;1(5) Almeida B et al., "Quantitative proteomic analysis of ibuprofen-degrading Patulibacter sp. strain I11.", Biodegradation, 2013 Sep;24(5):615-30 Jiménez G et al., "Description of Bacillus toyonensis sp. nov., a novel species of the Bacillus cereus group, and pairwise genome comparisons of the species of the group by means of ANI calculations.", Syst Appl Microbiol, 2013 Sep;36(6):383-91 Bomholt C et al., "Whole-Genome Sequence of the Clinical Strain Corynebacterium argentoratense DSM 44202, Isolated from a Human Throat Specimen.", Genome Announc, 2013 Oct 3;1(5) Goudenège D et al., "Comparative genomics of pathogenic lineages of Vibrio nigripulchritudo identifies virulence-associated traits.", ISME J, 2013 Oct;7(10):1985-96 Morais-Silva FO et al., "Roles of HynAB and Ech, the only two hydrogenases found in the model sulfate reducer Desulfovibrio gigas.", J Bacteriol, 2013 Oct;195(20):4753-60 Darrasse A et al., "Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads.", BMC Genomics, 2013 Nov 6;14:761 do Nascimento NC et al., "Genome Sequence of Mycoplasma parvum (Formerly Eperythrozoon parvum), a Diminutive Hemoplasma of the Pig.", Genome Announc, 2013 Nov 27;1(6) Poehlein A et al., "Complete Genome Sequence of the Solvent Producer Clostridium saccharobutylicum NCP262 (DSM 13864).", Genome Announc, 2013 Nov 27;1(6) Baby V et al., "Complete Genome Sequence of the Mesoplasma florum W37 Strain.", Genome Announc, 2013 Nov 27;1(6) Chen Y et al., "Whole-genome sequencing of gentamicin-resistant Campylobacter coli isolated from U.S. retail meats reveals novel plasmid-mediated aminoglycoside resistance genes.", Antimicrob Agents Chemother, 2013 Nov;57(11):5398-405 Eidam C et al., "Complete Genome Sequence of Mannheimia haemolytica Strain 42548 from a Case of Bovine Respiratory Disease.", Genome Announc, 2013 May 30;1(3) Poehlein A et al., "Complete Genome Sequence of Clostridium stercorarium subsp. stercorarium Strain DSM 8532, a Thermophilic Degrader of Plant Cell Wall Fibers.", Genome Announc, 2013 Mar 7;1(2):e0007313 Huntley S et al., "Complete genome sequence of Myxococcus stipitatus strain DSM 14675, a fruiting myxobacterium.", Genome Announc, 2013 Mar 21;1(2):e0010013 Cheng VW et al., "Complete Genome of the Solvent-Tolerant Staphylococcus warneri Strain SG1.", Genome Announc, 2013 Mar 14;1(2):e0003813 Bazylinski DA et al., "Magnetococcus marinus gen. nov., sp. nov., a marine, magnetotactic bacterium that represents a novel lineage (Magnetococcaceae fam. nov., Magnetococcales ord. nov.) at the base of the Alphaproteobacteria.", Int J Syst Evol Microbiol, 2013 Mar;63(Pt 3):801-808 Guy L et al., "A gene transfer agent and a dynamic repertoire of secretion systems hold the keys to the explosive radiation of the emerging pathogen Bartonella.", PLoS Genet, 2013 Mar;9(3):e1003393 Bishop-Lilly KA et al., "Genome Sequencing of Four Strains of Rickettsia prowazekii, the Causative Agent of Epidemic Typhus, Including One Flying Squirrel Isolate.", Genome Announc, 2013 Jun 27;1(3) Tokuda G et al., "Maintenance of essential amino acid synthesis pathways in the Blattabacterium cuenoti symbiont of a wood-feeding cockroach.", Biol Lett, 2013 Jun 23;9(3):20121153 Jin D et al., "Dynamics of fecal microbial communities in children with diarrhea of unknown etiology and genomic analysis of associated Streptococcus lutetiensis.", BMC Microbiol, 2013 Jun 19;13:141 Kuo PA et al., "Phosphate limitation induces the intergeneric inhibition of Pseudomonas aeruginosa by Serratia marcescens isolated from paper machines.", FEMS Microbiol Ecol, 2013 Jun;84(3):577-87 Kruse T et al., "Complete genome sequence of Dehalobacter restrictus PER-K23(T.).", Stand Genomic Sci, 2013 Jul 30;8(3):375-88 Sabree ZL et al., "The nutrient supplying capabilities of Uzinura, an endosymbiont of armoured scale insects.", Environ Microbiol, 2013 Jul;15(7):1988-99 Crossman LC et al., "A small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus.", ISME J, 2013 Jan;7(1):148-60 Sheppard AE et al., "Complete Genome Sequence of Bacillus thuringiensis Strain 407 Cry-.", Genome Announc, 2013 Jan;1(1) Cailliez-Grimal C et al., "Complete Chromosome Sequence of Carnobacterium maltaromaticum LMA 28.", Genome Announc, 2013 Jan;1(1) Murugapiran SK et al., "Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin.", Genome Announc, 2013 Jan;1(1) Leon MJ et al., "Draft Genome of Spiribacter salinus M19-40, an Abundant Gammaproteobacterium in Aquatic Hypersaline Environments.", Genome Announc, 2013 Jan;1(1) Tobias NJ et al., "Complete genome sequence of the frog pathogen Mycobacterium ulcerans ecovar Liflandii.", J Bacteriol, 2013 Feb;195(3):556-64 Supply P et al., "Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis.", Nat Genet, 2013 Feb;45(2):172-9 Jiménez G et al., "Complete Genome Sequence of Bacillus toyonensis BCT-7112T, the Active Ingredient of the Feed Additive Preparation Toyocerin.", Genome Announc, 2013 Dec 19;1(6) Olson AB et al., "Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation.", BMC Genomics, 2013 Dec 17;14:895 Brzuszkiewicz E et al., "Legionella oakridgensis ATCC 33761 genome sequence and phenotypic characterization reveals its replication capacity in amoebae.", Int J Med Microbiol, 2013 Dec;303(8):514-28 Nicholson WL et al., "Complete Genome Sequence of Serratia liquefaciens Strain ATCC 27592.", Genome Announc, 2013 Aug 15;1(4) Chung WC et al., "Complete Genome Sequence of Serratia marcescens WW4.", Genome Announc, 2013 Apr 4;1(2):e0012613 Tang B et al., "ContigScape: a Cytoscape plugin facilitating microbial genome gap closing.", BMC Genomics, 2013 Apr 30;14:289 Golyshin PN et al., "Genome Sequence of Thalassolituus oleivorans MIL-1 (DSM 14913T).", Genome Announc, 2013 Apr 18;1(2):e0014113 Pasternak Z et al., "By their genes ye shall know them: genomic signatures of predatory bacteria.", ISME J, 2013 Apr;7(4):756-69 Okubo T et al., "Genome analysis suggests that the soil oligotrophic bacterium Agromonas oligotrophica (Bradyrhizobium oligotrophicum) is a nitrogen-fixing symbiont of Aeschynomene indica.", Appl Environ Microbiol, 2013 Apr;79(8):2542-51 Kwon SK et al., "Genomic makeup of the marine flavobacterium Nonlabens (Donghaeana) dokdonensis and identification of a novel class of rhodopsins.", Genome Biol Evol, 2013;5(1):187-99 Kadnikov VV et al., "Genomic analysis of Melioribacter roseus, facultatively anaerobic organotrophic bacterium representing a novel deep lineage within Bacteriodetes/Chlorobi group.", PLoS One, 2013;8(1):e53047 Alves JM et al., "Genome evolution and phylogenomic analysis of Candidatus Kinetoplastibacterium, the betaproteobacterial endosymbionts of Strigomonas and Angomonas.", Genome Biol Evol, 2013;5(2):338-50 Patiño-Navarrete R et al., "Comparative genomics of Blattabacterium cuenoti: the frozen legacy of an ancient endosymbiont genome.", Genome Biol Evol, 2013;5(2):351-61 Pradel N et al., "The first genomic and proteomic characterization of a deep-sea sulfate reducer: insights into the piezophilic lifestyle of Desulfovibrio piezophilus.", PLoS One, 2013;8(1):e55130 Ku C et al., "Complete genomes of two dipteran-associated spiroplasmas provided insights into the origin, dynamics, and impacts of viral invasion in spiroplasma.", Genome Biol Evol, 2013;5(6):1151-64 Lo WS et al., "Comparison of metabolic capacities and inference of gene content evolution in mosquito-associated Spiroplasma diminutum and S. taiwanense.", Genome Biol Evol, 2013;5(8):1512-23 Saw JH et al., "Cultivation and complete genome sequencing of Gloeobacter kilaueensis sp. nov., from a lava cave in Kīlauea Caldera, Hawai'i.", PLoS One, 2013;8(10):e76376 Kwan JC et al., "Bacterial endosymbiosis in a chordate host: long-term co-evolution and conservation of secondary metabolism.", PLoS One, 2013;8(12):e80822 Wang Z et al., "Vibrio campbellii hmgA-mediated pyomelanization impairs quorum sensing, virulence, and cellular fitness.", Front Microbiol, 2013;4:379 Strobel T et al., "Complete genome sequence of Saccharothrix espanaensis DSM 44229(T) and comparison to the other completely sequenced Pseudonocardiaceae.", BMC Genomics, 2012 Sep 9;13:465 Mappley LJ et al., "Comparative genomics of Brachyspira pilosicoli strains: genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity.", BMC Genomics, 2012 Sep 5;13:454 Butler JE et al., "Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production.", BMC Genomics, 2012 Sep 12;13:471 Thomas F et al., "Characterization of the first alginolytic operons in a marine bacterium: from their emergence in marine Flavobacteriia to their independent transfers to marine Proteobacteria and human gut Bacteroides.", Environ Microbiol, 2012 Sep;14(9):2379-94 Watanabe T et al., "Draft genome sequence of a psychrotolerant sulfur-oxidizing bacterium, Sulfuricella denitrificans skB26, and proteomic insights into cold adaptation.", Appl Environ Microbiol, 2012 Sep;78(18):6545-9 Marx CJ et al., "Complete genome sequences of six strains of the genus Methylobacterium.", J Bacteriol, 2012 Sep;194(17):4746-8 Normand P et al., "Genome sequence of radiation-resistant Modestobacter marinus strain BC501, a representative actinobacterium that thrives on calcareous stone surfaces.", J Bacteriol, 2012 Sep;194(17):4773-4 Gaechter T et al., "Genome sequence of Enterococcus hirae (Streptococcus faecalis) ATCC 9790, a model organism for the study of ion transport, bioenergetics, and copper homeostasis.", J Bacteriol, 2012 Sep;194(18):5126-7 Parizzi LP et al., "The genome sequence of Propionibacterium acidipropionici provides insights into its biotechnological and industrial potential.", BMC Genomics, 2012 Oct 19;13:562 Raiol T et al., "Complete genome sequence of Mycobacterium massiliense.", J Bacteriol, 2012 Oct;194(19):5455 dos Santos AP et al., "Complete genome sequence of Mycoplasma wenyonii strain Massachusetts.", J Bacteriol, 2012 Oct;194(19):5458-9 Hobley L et al., "Genome analysis of a simultaneously predatory and prey-independent, novel Bdellovibrio bacteriovorus from the River Tiber, supports in silico predictions of both ancient and recent lateral gene transfer from diverse bacteria.", BMC Genomics, 2012 Nov 27;13:670 Chen HP et al., "Genomic and transcriptomic studies of an RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine)-degrading actinobacterium.", Appl Environ Microbiol, 2012 Nov;78(21):7798-800 Lucas S et al., "Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3.", J Bacteriol, 2012 Nov;194(21):5974-5 Dam B et al., "Complete genome sequence of Methylocystis sp. strain SC2, an aerobic methanotroph with high-affinity methane oxidation potential.", J Bacteriol, 2012 Nov;194(21):6008-9 Pester M et al., "Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T.", J Bacteriol, 2012 Nov;194(22):6300-1 Guimaraes AM et al., "Genome sequence of "Candidatus Mycoplasma haemolamae" strain purdue, a red blood cell pathogen of alpacas (Vicugna pacos) and llamas (Lama glama).", J Bacteriol, 2012 Nov;194(22):6312-3 Hong KW et al., "Complete genome sequence of Burkholderia sp. Strain GG4, a betaproteobacterium that reduces 3-oxo-N-acylhomoserine lactones and produces different N-acylhomoserine lactones.", J Bacteriol, 2012 Nov;194(22):6317 Qiao J et al., "Whole-genome sequence of Nocardiopsis alba strain ATCC BAA-2165, associated with honeybees.", J Bacteriol, 2012 Nov;194(22):6358-9 Xu Y et al., "Bacterial biosynthesis and maturation of the didemnin anti-cancer agents.", J Am Chem Soc, 2012 May 23;134(20):8625-32 Lam MM et al., "Comparative analysis of the first complete Enterococcus faecium genome.", J Bacteriol, 2012 May;194(9):2334-41 Shin SH et al., "Complete genome sequence of Klebsiella oxytoca KCTC 1686, used in production of 2,3-butanediol.", J Bacteriol, 2012 May;194(9):2371-2 Shin SH et al., "Complete genome sequence of Enterobacter aerogenes KCTC 2190.", J Bacteriol, 2012 May;194(9):2373-4 Chouaia B et al., "Genome sequence of Blastococcus saxobsidens DD2, a stone-inhabiting bacterium.", J Bacteriol, 2012 May;194(10):2752-3 Vera-Cabrera L et al., "Complete genome sequence of Nocardia brasiliensis HUJEG-1.", J Bacteriol, 2012 May;194(10):2761-2 Tekedar HC et al., "Genome sequence of the fish pathogen Flavobacterium columnare ATCC 49512.", J Bacteriol, 2012 May;194(10):2763-4 Byrne-Bailey KG et al., "Complete genome sequence of the anaerobic perchlorate-reducing bacterium Azospira suillum strain PS.", J Bacteriol, 2012 May;194(10):2767-8 Kim BJ et al., "Complete genome sequence of Mycobacterium intracellulare clinical strain MOTT-02.", J Bacteriol, 2012 May;194(10):2771 Wang Y et al., "Genome-wide dynamic transcriptional profiling in Clostridium beijerinckii NCIMB 8052 using single-nucleotide resolution RNA-Seq.", BMC Genomics, 2012 Mar 20;13:102 Neupane S et al., "Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9.", Stand Genomic Sci, 2012 Mar 19;6(1):54-62 Izquierdo JA et al., "Complete Genome Sequence of Clostridium clariflavum DSM 19732.", Stand Genomic Sci, 2012 Mar 19;6(1):104-15 Shin SH et al., "Genome sequence of Paenibacillus terrae HPL-003, a xylanase-producing bacterium isolated from soil found in forest residue.", J Bacteriol, 2012 Mar;194(5):1266 Pittet V et al., "Complete genome sequence of the beer spoilage organism Pediococcus claussenii ATCC BAA-344T.", J Bacteriol, 2012 Mar;194(5):1271-2 do Nascimento NC et al., "Complete genome sequence of Mycoplasma haemocanis strain Illinois.", J Bacteriol, 2012 Mar;194(6):1605-6 Fournier PE et al., "Complete genome sequence of Rickettsia slovaca, the agent of tick-borne lymphadenitis.", J Bacteriol, 2012 Mar;194(6):1612 Trost E et al., "Pangenomic study of Corynebacterium diphtheriae that provides insights into the genomic diversity of pathogenic isolates from cases of classical diphtheria, endocarditis, and pneumonia.", J Bacteriol, 2012 Jun;194(12):3199-215 Huntley S et al., "Complete genome sequence of the fruiting myxobacterium Corallococcus coralloides DSM 2259.", J Bacteriol, 2012 Jun;194(11):3012-3 Okumura K et al., "Complete genome sequence of Melissococcus plutonius DAT561, a strain that shows an unusual growth profile and is representative of an endemic cluster in Japan.", J Bacteriol, 2012 Jun;194(11):3014 Barbier P et al., "Complete genome sequence of Flavobacterium indicum GPSTA100-9T, isolated from warm spring water.", J Bacteriol, 2012 Jun;194(11):3024-5 Wu H et al., "Genomic and transcriptomic insights into the thermo-regulated biosynthesis of validamycin in Streptomyces hygroscopicus 5008.", BMC Genomics, 2012 Jul 24;13:337 Grimaud R et al., "Genome sequence of the marine bacterium Marinobacter hydrocarbonoclasticus SP17, which forms biofilms on hydrophobic organic compounds.", J Bacteriol, 2012 Jul;194(13):3539-40 Nagashima S et al., "Complete genome sequence of phototrophic betaproteobacterium Rubrivivax gelatinosus IL144.", J Bacteriol, 2012 Jul;194(13):3541-2 McMullen PD et al., "Genome sequence of Listeria monocytogenes 07PF0776, a cardiotropic serovar 4b strain.", J Bacteriol, 2012 Jul;194(13):3552 Filippini M et al., "Genome sequence of Fibrella aestuarina BUZ 2(T), a filamentous marine bacterium.", J Bacteriol, 2012 Jul;194(13):3555 Elbir H et al., "Complete genome sequence of Borrelia crocidurae.", J Bacteriol, 2012 Jul;194(14):3723-4 Clifford RJ et al., "Complete genome sequence of Providencia stuartii clinical isolate MRSN 2154.", J Bacteriol, 2012 Jul;194(14):3736-7 Goto T et al., "Complete genome sequence of Helicobacter cinaedi strain PAGU611, isolated in a case of human bacteremia.", J Bacteriol, 2012 Jul;194(14):3744-5 Grote J et al., "Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones.", Proc Natl Acad Sci U S A, 2012 Jan 10;109(2):506-10 Callaghan AV et al., "The genome sequence of Desulfatibacillum alkenivorans AK-01: a blueprint for anaerobic alkane oxidation.", Environ Microbiol, 2012 Jan;14(1):101-13 Garcia Costas AM et al., "Complete genome of Candidatus Chloracidobacterium thermophilum, a chlorophyll-based photoheterotroph belonging to the phylum Acidobacteria.", Environ Microbiol, 2012 Jan;14(1):177-90 Morohoshi T et al., "Complete genome sequence and characterization of the N-acylhomoserine lactone-degrading gene of the potato leaf-associated Solibacillus silvestris.", J Biosci Bioeng, 2012 Jan;113(1):20-5 Sabree ZL et al., "Genome shrinkage and loss of nutrient-providing potential in the obligate symbiont of the primitive termite Mastotermes darwiniensis.", Appl Environ Microbiol, 2012 Jan;78(1):204-10 Da K et al., "Potato cytosine methylation and gene expression changes induced by a beneficial bacterial endophyte, Burkholderia phytofirmans strain PsJN.", Plant Physiol Biochem, 2012 Jan;50(1):24-34 Siezen RJ et al., "Complete resequencing and reannotation of the Lactobacillus plantarum WCFS1 genome.", J Bacteriol, 2012 Jan;194(1):195-6 Huo YY et al., "Complete genome sequence of Pelagibacterium halotolerans B2(T).", J Bacteriol, 2012 Jan;194(1):197-8 Masai E et al., "Complete genome sequence of Sphingobium sp. strain SYK-6, a degrader of lignin-derived biaryls and monoaryls.", J Bacteriol, 2012 Jan;194(2):534-5 Lee SH et al., "Complete genome sequence of the BTEX-degrading bacterium Pseudoxanthomonas spadix BD-a59.", J Bacteriol, 2012 Jan;194(2):544 Schutzer SE et al., "Whole-genome sequences of Borrelia bissettii, Borrelia valaisiana, and Borrelia spielmanii.", J Bacteriol, 2012 Jan;194(2):545-6 Vuilleumier S et al., "Genome sequence of the haloalkaliphilic methanotrophic bacterium Methylomicrobium alcaliphilum 20Z.", J Bacteriol, 2012 Jan;194(2):551-2 Kim SH et al., "Genome sequence of Desulfitobacterium hafniense DCB-2, a Gram-positive anaerobe capable of dehalogenation and metal reduction.", BMC Microbiol, 2012 Feb 8;12:21 Ormeño-Orrillo E et al., "Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.).", BMC Genomics, 2012 Dec 27;13:735 Sloan DB et al., "Endosymbiotic bacteria as a source of carotenoids in whiteflies.", Biol Lett, 2012 Dec 23;8(6):986-9 Oehler D et al., "Genome-guided analysis of physiological and morphological traits of the fermentative acetate oxidizer Thermacetogenium phaeum.", BMC Genomics, 2012 Dec 23;13:723 Rückert C et al., "Genome sequence of the halotolerant bacterium Corynebacterium halotolerans type strain YIM 70093(T) (= DSM 44683(T)).", Stand Genomic Sci, 2012 Dec 19;7(2):284-93 Leonard MT et al., "Complete genome sequence of Liberibacter crescens BT-1.", Stand Genomic Sci, 2012 Dec 19;7(2):271-83 Kwan JC et al., "Genome streamlining and chemical defense in a coral reef symbiosis.", Proc Natl Acad Sci U S A, 2012 Dec 11;109(50):20655-60 Aklujkar M et al., "The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features.", BMC Genomics, 2012 Dec 10;13:690 Thole S et al., "Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life.", ISME J, 2012 Dec;6(12):2229-44 Sloan DB et al., "Genome reduction and co-evolution between the primary and secondary bacterial symbionts of psyllids.", Mol Biol Evol, 2012 Dec;29(12):3781-92 Guo Y et al., "Draft genome sequence of Rahnella aquatilis strain HX2, a plant growth-promoting rhizobacterium isolated from vineyard soil in Beijing, China.", J Bacteriol, 2012 Dec;194(23):6646-7 Jung JY et al., "Complete genome sequence of Leuconostoc gelidum strain JB7, isolated from kimchi.", J Bacteriol, 2012 Dec;194(23):6665 Jung JY et al., "Complete genome sequence of Leuconostoc carnosum strain JB16, isolated from kimchi.", J Bacteriol, 2012 Dec;194(23):6672-3 Lai Q et al., "Complete genome sequence of Alcanivorax dieselolei type strain B5.", J Bacteriol, 2012 Dec;194(23):6674 de Oliveira Cunha C et al., "Complete genome sequence of 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APS.", Nature, 2000 Sep 7;407(6800):81-6 Dandekar T et al., "Re-annotating the Mycoplasma pneumoniae genome sequence: adding value, function and reading frames.", Nucleic Acids Res, 2000 Sep 1;28(17):3278-88 Ogata H et al., "Selfish DNA in protein-coding genes of Rickettsia.", Science, 2000 Oct 13;290(5490):347-50 Glass JI et al., "The complete sequence of the mucosal pathogen Ureaplasma urealyticum.", Nature, 2000 Oct 12;407(6805):757-62 Ohnishi M et al., "Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655.", Syst Appl Microbiol, 2000 Oct;23(3):315-24 Yokoyama K et al., "Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak.", Gene, 2000 Nov 27;258(1-2):127-39 Takami H et al., "Complete genome sequence of the alkaliphilic bacterium Bacillus halodurans and genomic sequence comparison with Bacillus subtilis.", Nucleic Acids Res, 2000 Nov 1;28(21):4317-31 Read TD et al., "Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39.", Nucleic Acids Res, 2000 Mar 15;28(6):1397-406 Tettelin H et al., "Complete genome sequence of Neisseria meningitidis serogroup B strain MC58.", Science, 2000 Mar 10;287(5459):1809-15 Nasu H et al., "A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains.", J Clin Microbiol, 2000 Jun;38(6):2156-61 Viseshakul N et al., "Sequence and expression analysis of a surface antigen gene family of the rickettsia Anaplasma marginale.", Gene, 2000 Jul 25;253(1):45-53 Simpson AJ et al., "The genome sequence of the plant pathogen Xylella fastidiosa. 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Sequence features in the 1 Mb region from map positions 64% to 92% of the genome.", DNA Res, 1995 Aug 31;2(4):153-66, 191-8 Palmer GH et al., "The immunoprotective Anaplasma marginale major surface protein 2 is encoded by a polymorphic multigene family.", Infect Immun, 1994 Sep;62(9):3808-16 McGarey DJ et al., "Putative adhesins of Anaplasma marginale: major surface polypeptides 1a and 1b.", Infect Immun, 1994 Oct;62(10):4594-601 Oberle SM et al., "Expression and immune recognition of the conserved MSP4 outer membrane protein of Anaplasma marginale.", Infect Immun, 1993 Dec;61(12):5245-51 Visser ES et al., "The Anaplasma marginale msp5 gene encodes a 19-kilodalton protein conserved in all recognized Anaplasma species.", Infect Immun, 1992 Dec;60(12):5139-44 Less...
Submission	Registration date: 8-Feb-2013 NCBI

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Resource Name	Number of Links
Sequence data
Nucleotide (total)	1350
Genomic DNA	44
Transcript	1306
Publications
PubMed	858
PMC	706

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Bacterial 23S Ribosomal RNA RefSeq Targeted Loci Project

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