ID 886945 - BioProject

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Accession: PRJEB56428 ID: 886945

EMG produced TPA metagenomics assembly of PRJNA597465 data set (Species Level Characterization of Dental Plaque Associated Microbiome of Native Indian Children using Metagenome Sequencing).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA597465, and was assembled with metaSPAdes v3. More...

Accession	PRJEB56428
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 4-Oct-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	13313
WGS master	126
Publications
PubMed	1
PMC	1
Other datasets
BioSample	126
Assembly	126

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

126
126

Assembly	WGS	BioSample	Taxonomy
GCA_963456955.1	CAUONC000000000	SAMEA114382563	Abiotrophia defectiva
GCA_963457355.1	CAUOOY000000000	SAMEA114382538	Actinomyces dentalis
GCA_963457415.1	CAUOOZ000000000	SAMEA114382518	Actinomyces dentalis
GCA_963457165.1	CAUOOF000000000	SAMEA114382460	Actinomyces gerencseriae
GCA_963456745.1	CAUOMV000000000	SAMEA114382494	Actinomyces johnsonii
GCA_963457055.1	CAUONU000000000	SAMEA114382549	Actinomyces naeslundii
GCA_963457255.1	CAUONN000000000	SAMEA114382520	Actinomyces naeslundii
GCA_963457275.1	CAUOOP000000000	SAMEA114382508	Actinomyces oris
GCA_963456945.1	CAUONG000000000	SAMEA114382455	Alloprevotella tannerae
GCA_963457405.1	CAUOOU000000000	SAMEA114382473	Arachnia propionica
GCA_963456335.1	CAUOLI000000000	SAMEA114382517	Bifidobacterium dentium
GCA_963457015.1	CAUONW000000000	SAMEA114382529	Capnocytophaga gingivalis
GCA_963457295.1	CAUOOR000000000	SAMEA114382536	Capnocytophaga granulosa
GCA_963457095.1	CAUOOC000000000	SAMEA114382531	Capnocytophaga leadbetteri
GCA_963457175.1	CAUONT000000000	SAMEA114382498	Cardiobacterium hominis
GCA_963456845.1	CAUOMU000000000	SAMEA114382553	Corynebacterium durum
GCA_963456405.1	CAUOLB000000000	SAMEA114382506	Corynebacterium matruchotii
GCA_963457235.1	CAUOPG000000000	SAMEA114382565	Dialister invisus
GCA_963456855.1	CAUOMY000000000	SAMEA114382556	Haemophilus parainfluenzae
GCA_963456875.1	CAUONF000000000	SAMEA114382459	Haemophilus parainfluenzae
GCA_963456345.1	CAUOLM000000000	SAMEA114382533	Haemophilus parainfluenzae
GCA_963457245.1	CAUOOM000000000	SAMEA114382575	Hoylesella pleuritidis
GCA_963456815.1	CAUOMZ000000000	SAMEA114382561	Kingella denitrificans
GCA_963457085.1	CAUOOB000000000	SAMEA114382488	Kingella oralis
GCA_963457145.1	CAUOOL000000000	SAMEA114382491	Kingella oralis
GCA_963457315.1	CAUOOV000000000	SAMEA114382502	Lachnoanaerobaculum saburreum
GCA_963456395.1	CAUOLD000000000	SAMEA114382513	Lancefieldella parvula
GCA_963456305.1	CAUOKZ000000000	SAMEA114382566	Lancefieldella rimae
GCA_963457185.1	CAUOPI000000000	SAMEA114382534	Lautropia mirabilis
GCA_963456825.1	CAUONP000000000	SAMEA114382516	Limosilactobacillus vaginalis
GCA_963456735.1	CAUOML000000000	SAMEA114382481	Megasphaera micronuciformis
GCA_963456655.1	CAUOMS000000000	SAMEA114382574	Neisseria sicca
GCA_963457395.1	CAUOPD000000000	SAMEA114382532	Neisseria sicca
GCA_963456785.1	CAUOMO000000000	SAMEA114382468	Peptostreptococcus stomatis
GCA_963457115.1	CAUOOI000000000	SAMEA114382569	Porphyromonas catoniae
GCA_963456315.1	CAUOLA000000000	SAMEA114382453	Porphyromonas endodontalis
GCA_963457435.1	CAUOOX000000000	SAMEA114382472	Prevotella conceptionensis
GCA_963456565.1	CAUOME000000000	SAMEA114382573	Prevotella denticola
GCA_963456575.1	CAUOMI000000000	SAMEA114382539	Prevotella histicola
GCA_963456495.1	CAUOLX000000000	SAMEA114382576	Prevotella nigrescens
GCA_963457065.1	CAUONV000000000	SAMEA114382475	Prevotella pallens
GCA_963457135.1	CAUONI000000000	SAMEA114382467	Prevotella veroralis
GCA_963456535.1	CAUOLR000000000	SAMEA114382545	Rothia aeria
GCA_963456795.1	CAUOPE000000000	SAMEA114382562	Rothia dentocariosa
GCA_963456885.1	CAUONH000000000	SAMEA114382462	Schaalia odontolytica
GCA_963457385.1	CAUOPJ000000000	SAMEA114382570	Segatella oris
GCA_963457445.1	CAUOPM000000000	SAMEA114382537	Segatella oulorum
GCA_963457335.1	CAUOOS000000000	SAMEA114382540	Segatella salivae
GCA_963456965.1	CAUONR000000000	SAMEA114382510	Selenomonas flueggei
GCA_963456895.1	CAUONE000000000	SAMEA114382559	Selenomonas noxia
GCA_963456465.1	CAUOLO000000000	SAMEA114382496	Selenomonas noxia
GCA_963457285.1	CAUOOQ000000000	SAMEA114382527	Selenomonas sputigena
GCA_963456585.1	CAUOLT000000000	SAMEA114382507	Stomatobaculum longum
GCA_963456615.1	CAUOMF000000000	SAMEA114382499	Streptococcus cristatus
GCA_963456915.1	CAUONL000000000	SAMEA114382509	Streptococcus gordonii
GCA_963456725.1	CAUOMN000000000	SAMEA114382469	Streptococcus oralis
GCA_963456765.1	CAUOMW000000000	SAMEA114382490	Streptococcus oralis
GCA_963456595.1	CAUOMJ000000000	SAMEA114382523	Streptococcus parasanguinis
GCA_963456445.1	CAUOLP000000000	SAMEA114382567	Streptococcus sanguinis
GCA_963456755.1	CAUOMX000000000	SAMEA114382495	Veillonella parvula
GCA_963456485.1	CAUOMA000000000	SAMEA114382571	[Eubacterium] brachy
GCA_963457425.1	CAUOPL000000000	SAMEA114382548	uncultured Abiotrophia sp.
GCA_963456425.1	CAUOLW000000000	SAMEA114382543	uncultured Actinobaculum sp.
GCA_963457455.1	CAUOPN000000000	SAMEA114382558	uncultured Actinomyces sp.
GCA_963456705.1	CAUOMG000000000	SAMEA114382480	uncultured Actinomyces sp.
GCA_963456645.1	CAUOMP000000000	SAMEA114382482	uncultured Actinomyces sp.
GCA_963457365.1	CAUOPF000000000	SAMEA114382568	uncultured Aggregatibacter sp.
GCA_963456455.1	CAUOLS000000000	SAMEA114382524	uncultured Ancrocorticia sp.
GCA_963456675.1	CAUOMM000000000	SAMEA114382466	uncultured Bacteroidetes bacterium
GCA_963457155.1	CAUONZ000000000	SAMEA114382470	uncultured Bacteroidia bacterium
GCA_963456935.1	CAUONM000000000	SAMEA114382515	uncultured Campylobacter sp.
GCA_963456905.1	CAUONO000000000	SAMEA114382484	uncultured Campylobacter sp.
GCA_963456995.1	CAUONQ000000000	SAMEA114382492	uncultured Campylobacter sp.
GCA_963456375.1	CAUOLH000000000	SAMEA114382522	uncultured Candidatus Saccharibacteria bacterium
GCA_963456515.1	CAUOMC000000000	SAMEA114382483	uncultured Candidatus Saccharibacteria bacterium
GCA_963456355.1	CAUOLK000000000	SAMEA114382478	uncultured Candidatus Saccharibacteria bacterium
GCA_963456415.1	CAUOLQ000000000	SAMEA114382542	uncultured Candidatus Saccharibacteria bacterium
GCA_963456685.1	CAUOPB000000000	SAMEA114382530	uncultured Candidatus Saccharibacteria bacterium
GCA_963457205.1	CAUOPH000000000	SAMEA114382526	uncultured Candidatus Saccharibacteria bacterium
GCA_963456475.1	CAUOMD000000000	SAMEA114382486	uncultured Candidatus Saccharibacteria bacterium
GCA_963456275.1	CAUOLJ000000000	SAMEA114382572	uncultured Candidatus Saccharibacteria bacterium
GCA_963456295.1	CAUOLG000000000	SAMEA114382541	uncultured Candidatus Saccharibacteria bacterium
GCA_963456285.1	CAUOLC000000000	SAMEA114382528	uncultured Candidatus Saccharibacteria bacterium
GCA_963456325.1	CAUOKY000000000	SAMEA114382465	uncultured Candidatus Saccharibacteria bacterium
GCA_963456365.1	CAUOLE000000000	SAMEA114382452	uncultured Candidatus Saccharibacteria bacterium
GCA_963456255.1	CAUOKW000000000	SAMEA114382457	uncultured Candidatus Saccharibacteria bacterium
GCA_963456245.1	CAUOKV000000000	SAMEA114382471	uncultured Candidatus Saccharibacteria bacterium
GCA_963456505.1	CAUOLL000000000	SAMEA114382557	uncultured Candidatus Saccharibacteria bacterium
GCA_963456265.1	CAUOKX000000000	SAMEA114382564	uncultured Candidatus Saccharibacteria bacterium
GCA_963456975.1	CAUONK000000000	SAMEA114382504	uncultured Capnocytophaga sp.
GCA_963457345.1	CAUOOT000000000	SAMEA114382456	uncultured Capnocytophaga sp.
GCA_963457225.1	CAUOOD000000000	SAMEA114382489	uncultured Capnocytophaga sp.
GCA_963457305.1	CAUOOW000000000	SAMEA114382544	uncultured Capnocytophaga sp.
GCA_963457025.1	CAUOPC000000000	SAMEA114382535	uncultured Granulicatella sp.
GCA_963456715.1	CAUOMR000000000	SAMEA114382463	uncultured Granulicatella sp.
GCA_963456865.1	CAUONA000000000	SAMEA114382500	uncultured Haemophilus sp.
GCA_963457075.1	CAUOOG000000000	SAMEA114382497	uncultured Kingella sp.
GCA_963457105.1	CAUOOJ000000000	SAMEA114382560	uncultured Kingella sp.
GCA_963457125.1	CAUOOH000000000	SAMEA114382514	uncultured Lachnoanaerobaculum sp.
GCA_963456635.1	CAUOMT000000000	SAMEA114382519	uncultured Lachnospiraceae bacterium
GCA_963456605.1	CAUOMH000000000	SAMEA114382511	uncultured Micrococcales bacterium
GCA_963457005.1	CAUOOA000000000	SAMEA114382503	uncultured Mitsuokella sp.
GCA_963457265.1	CAUOOO000000000	SAMEA114382521	uncultured Neisseria sp.
GCA_963456545.1	CAUOLV000000000	SAMEA114382501	uncultured Neisseria sp.
GCA_963456835.1	CAUOND000000000	SAMEA114382454	uncultured Neisseria sp.
GCA_963456805.1	CAUOMQ000000000	SAMEA114382479	uncultured Neisseria sp.
GCA_963457485.1	CAUOPP000000000	SAMEA114382551	uncultured Olsenella sp.
GCA_963457035.1	CAUOOK000000000	SAMEA114382547	uncultured Porphyromonadaceae bacterium
GCA_963456985.1	CAUONY000000000	SAMEA114382477	uncultured Porphyromonadaceae bacterium
GCA_963456435.1	CAUOLN000000000	SAMEA114382493	uncultured Porphyromonadaceae bacterium
GCA_963456665.1	CAUOMK000000000	SAMEA114382525	uncultured Porphyromonas sp.
GCA_963457375.1	CAUOPK000000000	SAMEA114382550	uncultured Porphyromonas sp.
GCA_963456625.1	CAUOMB000000000	SAMEA114382461	uncultured Porphyromonas sp.
GCA_963456555.1	CAUOLY000000000	SAMEA114382458	uncultured Porphyromonas sp.
GCA_963457325.1	CAUOON000000000	SAMEA114382451	uncultured Prevotella sp.
GCA_963457045.1	CAUONB000000000	SAMEA114382552	uncultured Prevotella sp.
GCA_963457465.1	CAUOPA000000000	SAMEA114382464	uncultured Prevotella sp.
GCA_963456925.1	CAUONS000000000	SAMEA114382474	uncultured Prevotella sp.
GCA_963457495.1	CAUOPQ000000000	SAMEA114382505	uncultured Prevotella sp.
GCA_963457475.1	CAUOPO000000000	SAMEA114382554	uncultured Propionibacteriaceae bacterium
GCA_963456525.1	CAUOLU000000000	SAMEA114382512	uncultured Schwartzia sp.
GCA_963457195.1	CAUOOE000000000	SAMEA114382485	uncultured Selenomonas sp.
GCA_963456695.1	CAUOLZ000000000	SAMEA114382487	uncultured Streptococcus sp.
GCA_963456385.1	CAUOLF000000000	SAMEA114382555	uncultured Streptococcus sp.
GCA_963457215.1	CAUONX000000000	SAMEA114382546	uncultured Tannerella sp.
GCA_963456775.1	CAUONJ000000000	SAMEA114382476	uncultured bacterium

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EMG produced TPA metagenomics assembly of PRJNA597465 data set (Species Level Characterization of Dental Plaque Associated Microbiome of Native Indian Children using Metagenome Sequencing).

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