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LOC100005423 uncharacterized LOC100005423 [ Danio rerio (zebrafish) ]

Gene ID: 100005423, updated on 12-Sep-2024

Summary

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Gene symbol
LOC100005423
Gene description
uncharacterized LOC100005423
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See LOC100005423 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (20859069..20862447, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (20827649..20830389, complement)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100535624 Neighboring gene deoxyhypusine hydroxylase/monooxygenase Neighboring gene fizzy/cell division cycle 20 related 1a Neighboring gene si:ch73-196i15.3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein LOC100005423

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    20859069..20862447 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021478409.2 → XP_021334084.1  uncharacterized protein LOC100005423

    UniProtKB/TrEMBL
    A0A8M1PSV9
    Conserved Domains (1) summary
    cl21562
    Location:212 → 375
    DDE_Tnp_4; DDE superfamily endonuclease

RNA

  1. XR_011016577.1 RNA Sequence

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394719.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    380967..384345 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001344450.8 → XP_001344486.2  uncharacterized protein LOC100005423

    UniProtKB/TrEMBL
    A0A8M1PSV9
    Conserved Domains (1) summary
    cl21562
    Location:212 → 375
    DDE_Tnp_4; DDE superfamily endonuclease

RNA

  1. XR_011009702.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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