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Zfp715 zinc finger protein 715 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100360772, updated on 17-Aug-2024

Summary

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Official Symbol
Zfp715provided by RGD
Official Full Name
zinc finger protein 715provided by RGD
Primary source
RGD:1624201
See related
EnsemblRapid:ENSRNOG00000024056 AllianceGenome:RGD:1624201
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Dzf17; Zfp17
Summary
Orthologous to human ZNF175 (zinc finger protein 175) and ZNF585B (zinc finger protein 585B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Lung (RPKM 128.7), Thymus (RPKM 123.4) and 9 other tissues See more
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Genomic context

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Location:
1q22
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (102844466..102884730, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (93706005..93748131, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (98614943..98631142)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 431 like 12 Neighboring gene interferon stimulated exonuclease gene 20 like 1 Neighboring gene sialic acid binding Ig-like lectin 5 Neighboring gene sialic acid binding Ig-like lectin 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. A novel profile of expressed sequence tags for zinc finger encoding genes from the poorly differentiated exocrine pancreatic cell line AR4IP. Gebelein B, et al. Cancer Lett, 1996 Aug 2. PMID 8697448
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 260; zinc finger protein 665; zinc finger protein 715; zinc finger protein ZFP2
Names
zinc finger protein 17
zinc finger protein 2 homolog
zinc finger protein 260-like
zinc finger protein 585B
zinc finger protein 665-like
zinc finger protein 708

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001432725.1 → NP_001419654.1  zinc finger protein 715 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

  2. NM_001432726.1 → NP_001419655.1  zinc finger protein 715 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

  3. NM_001432727.1 → NP_001419656.1  zinc finger protein 715 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

  4. NM_001432728.1 → NP_001419657.1  zinc finger protein 715 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

  5. NM_001432729.1 → NP_001419658.1  zinc finger protein 715 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

  6. NM_001432730.1 → NP_001419659.1  zinc finger protein 715 isoform a

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

  7. NM_001432731.1 → NP_001419660.1  zinc finger protein 715 isoform b

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

  8. NM_001432732.1 → NP_001419661.1  zinc finger protein 715 isoform c

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    102844466..102884730 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039100894.2 → XP_038956822.1  zinc finger protein 665 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZL4
    Conserved Domains (4) summary
    smart00349
    Location:27 → 84
    KRAB; krueppel associated box
    COG5048
    Location:388 → 790
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:420 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:796 → 820
    zf-H2C2_2; Zinc-finger double domain

  2. XM_063278100.1 → XP_063134170.1  zinc finger protein ZFP2 isoform X3

    UniProtKB/TrEMBL
    A0A8I6A558

  3. XM_063278102.1 → XP_063134172.1  zinc finger protein ZFP2 isoform X3

    UniProtKB/TrEMBL
    A0A8I6A558

  4. XM_039100897.2 → XP_038956825.1  zinc finger protein ZFP2 isoform X3

    UniProtKB/TrEMBL
    A0A8I6A558
    Conserved Domains (4) summary
    COG5048
    Location:356 → 758
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:388 → 408
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:27 → 66
    KRAB; KRAB box
    pfam13465
    Location:764 → 788
    zf-H2C2_2; Zinc-finger double domain

  5. XM_039100896.2 → XP_038956824.1  zinc finger protein ZFP2 isoform X2

    Conserved Domains (4) summary
    smart00349
    Location:5 → 62
    KRAB; krueppel associated box
    COG5048
    Location:366 → 768
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:398 → 418
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:774 → 798
    zf-H2C2_2; Zinc-finger double domain

  6. XM_017590090.3 → XP_017445579.1  zinc finger protein 665 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZL4
    Conserved Domains (4) summary
    smart00349
    Location:27 → 84
    KRAB; krueppel associated box
    COG5048
    Location:388 → 790
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:420 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:796 → 820
    zf-H2C2_2; Zinc-finger double domain

  7. XM_017590083.3 → XP_017445572.1  zinc finger protein 665 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZL4
    Conserved Domains (4) summary
    smart00349
    Location:27 → 84
    KRAB; krueppel associated box
    COG5048
    Location:388 → 790
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:420 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:796 → 820
    zf-H2C2_2; Zinc-finger double domain

  8. XM_017590079.3 → XP_017445568.1  zinc finger protein 665 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZL4
    Conserved Domains (4) summary
    smart00349
    Location:27 → 84
    KRAB; krueppel associated box
    COG5048
    Location:388 → 790
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:420 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:796 → 820
    zf-H2C2_2; Zinc-finger double domain

  9. XM_017590089.3 → XP_017445578.1  zinc finger protein 665 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZL4
    Conserved Domains (4) summary
    smart00349
    Location:27 → 84
    KRAB; krueppel associated box
    COG5048
    Location:388 → 790
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:420 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:796 → 820
    zf-H2C2_2; Zinc-finger double domain

  10. XM_017590078.3 → XP_017445567.1  zinc finger protein 665 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZL4
    Conserved Domains (4) summary
    smart00349
    Location:27 → 84
    KRAB; krueppel associated box
    COG5048
    Location:388 → 790
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:420 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:796 → 820
    zf-H2C2_2; Zinc-finger double domain

  11. XM_017590077.3 → XP_017445566.1  zinc finger protein 665 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZL4
    Conserved Domains (4) summary
    smart00349
    Location:27 → 84
    KRAB; krueppel associated box
    COG5048
    Location:388 → 790
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:420 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:796 → 820
    zf-H2C2_2; Zinc-finger double domain

  12. XM_039100895.2 → XP_038956823.1  zinc finger protein 665 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZL4
    Conserved Domains (4) summary
    smart00349
    Location:27 → 84
    KRAB; krueppel associated box
    COG5048
    Location:388 → 790
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:420 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:796 → 820
    zf-H2C2_2; Zinc-finger double domain

  13. XM_017590086.3 → XP_017445575.1  zinc finger protein 665 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZL4
    Conserved Domains (4) summary
    smart00349
    Location:27 → 84
    KRAB; krueppel associated box
    COG5048
    Location:388 → 790
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:420 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:796 → 820
    zf-H2C2_2; Zinc-finger double domain

  14. XM_017590081.3 → XP_017445570.1  zinc finger protein 665 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZL4
    Conserved Domains (4) summary
    smart00349
    Location:27 → 84
    KRAB; krueppel associated box
    COG5048
    Location:388 → 790
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:420 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:796 → 820
    zf-H2C2_2; Zinc-finger double domain

  15. XM_017590091.3 → XP_017445580.1  zinc finger protein 665 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZL4
    Conserved Domains (4) summary
    smart00349
    Location:27 → 84
    KRAB; krueppel associated box
    COG5048
    Location:388 → 790
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:420 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:796 → 820
    zf-H2C2_2; Zinc-finger double domain

  16. XM_017590084.3 → XP_017445573.1  zinc finger protein 665 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZL4
    Conserved Domains (4) summary
    smart00349
    Location:27 → 84
    KRAB; krueppel associated box
    COG5048
    Location:388 → 790
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:420 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:796 → 820
    zf-H2C2_2; Zinc-finger double domain

  17. XM_017590080.3 → XP_017445569.1  zinc finger protein 665 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZL4
    Conserved Domains (4) summary
    smart00349
    Location:27 → 84
    KRAB; krueppel associated box
    COG5048
    Location:388 → 790
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:420 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:796 → 820
    zf-H2C2_2; Zinc-finger double domain

  18. XM_063278053.1 → XP_063134123.1  zinc finger protein 665 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZZL4

  19. XM_017590094.3 → XP_017445583.1  zinc finger protein 260 isoform X4

    UniProtKB/TrEMBL
    F1M700
    Related
    ENSRNOP00000100675.1, ENSRNOT00000152576.1
Nucleotide Protein Strain
Heading Accession and Version

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