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Zfp938 zinc finger protein 938 [ Mus musculus (house mouse) ]

Gene ID: 237411, updated on 2-Nov-2024

Summary

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Official Symbol
Zfp938provided by MGI
Official Full Name
zinc finger protein 938provided by MGI
Primary source
MGI:MGI:3621440
See related
Ensembl:ENSMUSG00000062931 AllianceGenome:MGI:3621440
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
B230315N10Rik
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in CNS E18 (RPKM 5.6), frontal lobe adult (RPKM 4.8) and 16 other tissues See more
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Genomic context

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See Zfp938 in Genome Data Viewer
Location:
10 C1; 10 39.72 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (82060684..82077114, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (82224850..82241280, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40720 Neighboring gene mitochondrial pyruvate carrier 2 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E8352 Neighboring gene STARR-seq mESC enhancer starr_27359 Neighboring gene SPATA31 subfamily H member 1 Neighboring gene STARR-positive B cell enhancer mm9_chr10:81816788-81817089 Neighboring gene predicted gene 4924

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Clone Names

  • MGC19022

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC237411

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105557.2 → NP_001099027.2  uncharacterized protein LOC237411 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC160865
    Consensus CDS
    CCDS48652.1
    UniProtKB/TrEMBL
    E9Q9G3
    Related
    ENSMUSP00000047110.9, ENSMUST00000041264.15
    Conserved Domains (5) summary
    smart00349
    Location:4 → 45
    KRAB; krueppel associated box
    COG5048
    Location:159 → 534
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:437 → 457
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 41
    KRAB; KRAB box
    pfam13465
    Location:449 → 474
    zf-H2C2_2; Zinc-finger double domain

  2. NM_001379437.1 → NP_001366366.1  uncharacterized protein LOC237411 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC160865
    Conserved Domains (2) summary
    COG5048
    Location:229 → 512
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:399 → 419
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. NM_001379438.1 → NP_001366367.1  uncharacterized protein LOC237411 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC160865
    Conserved Domains (3) summary
    COG5048
    Location:261 → 544
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:431 → 451
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:2 → 38
    KRAB; KRAB box

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    82060684..82077114 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_172789.1: Suppressed sequence

    Description
    NM_172789.1: This RefSeq was permanently suppressed because it does not originate from this locus and appears to be spurious transcription that is not sufficient evidence to define a distinct locus.
Nucleotide Protein Strain
Heading Accession and Version

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