Zfp938 zinc finger protein 938 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Zfp938provided by MGI
Official Full Name: zinc finger protein 938provided by MGI
Primary source: MGI:MGI:3621440
See related: Ensembl:ENSMUSG00000062931 AllianceGenome:MGI:3621440
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: B230315N10Rik
Summary: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. [provided by Alliance of Genome Resources, Nov 2024]
Expression: Broad expression in CNS E18 (RPKM 5.6), frontal lobe adult (RPKM 4.8) and 16 other tissues See more
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: 10 C1; 10 39.72 cM

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	10	NC_000076.7 (82060684..82077114, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	10	NC_000076.6 (82224850..82241280, complement)

Chromosome 10 - NC_000076.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Variation

Go to the top of the page Help

Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (1)

General gene information

Go to the top of the page Help

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

General protein information

Go to the top of the page Help

Preferred Names: uncharacterized protein LOC237411

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001105557.2 → NP_001099027.2 uncharacterized protein LOC237411 isoform 1

Status: VALIDATED

Source sequence(s)

AC160865

Consensus CDS

CCDS48652.1

UniProtKB/TrEMBL

E9Q9G3

Related

ENSMUSP00000047110.9, ENSMUST00000041264.15

Conserved Domains (5) summary

smart00349
Location:4 → 45

KRAB; krueppel associated box

COG5048
Location:159 → 534

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:437 → 457

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam01352
Location:4 → 41

KRAB; KRAB box

pfam13465
Location:449 → 474

zf-H2C2_2; Zinc-finger double domain
NM_001379437.1 → NP_001366366.1 uncharacterized protein LOC237411 isoform 2

Status: VALIDATED

Source sequence(s)

AC160865

Conserved Domains (2) summary

COG5048
Location:229 → 512

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:399 → 419

ZF_C2H2; C2H2 Zn finger [structural motif]
NM_001379438.1 → NP_001366367.1 uncharacterized protein LOC237411 isoform 3

Status: VALIDATED

Source sequence(s)

AC160865

Conserved Domains (3) summary

COG5048
Location:261 → 544

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:431 → 451

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam01352
Location:2 → 38

KRAB; KRAB box

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000076.7 Reference GRCm39 C57BL/6J

Range

82060684..82077114 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_172789.1: Suppressed sequence

Description

NM_172789.1: This RefSeq was permanently suppressed because it does not originate from this locus and appears to be spurious transcription that is not sufficient evidence to define a distinct locus.