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gtf3c6 general transcription factor IIIC, polypeptide 6, alpha [ Danio rerio (zebrafish) ]

Gene ID: 393232, updated on 17-Aug-2024

Summary

Official Symbol
gtf3c6provided by ZNC
Official Full Name
general transcription factor IIIC, polypeptide 6, alphaprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1009
See related
Ensembl:ENSDARG00000043301 AllianceGenome:ZFIN:ZDB-GENE-040426-1009
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:56388
Summary
Predicted to be involved in transcription by RNA polymerase III. Predicted to be part of transcription factor TFIIIC complex. Orthologous to human GTF3C6 (general transcription factor IIIC subunit 6). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See gtf3c6 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
1
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (17252487..17253389)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (17344510..17345412)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene natriuretic peptide C-like Neighboring gene NOP2 nucleolar protein homolog (yeast) Neighboring gene EMG1 N1-specific pseudouridine methyltransferase Neighboring gene Kell metallo-endopeptidase (Kell blood group)

Genomic regions, transcripts, and products

General protein information

Preferred Names
general transcription factor 3C polypeptide 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200262.1NP_956556.1  general transcription factor 3C polypeptide 6

    See identical proteins and their annotated locations for NP_956556.1

    Status: PROVISIONAL

    Source sequence(s)
    BC049013
    UniProtKB/TrEMBL
    Q7ZUJ5
    Related
    ENSDARP00000063571.5, ENSDART00000063572.7
    Conserved Domains (1) summary
    pfam10419
    Location:3265
    TFIIIC_sub6; TFIIIC subunit

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    17252487..17253389
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)