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zgc:112982 zgc:112982 [ Danio rerio (zebrafish) ]

Gene ID: 503771, updated on 28-Oct-2024

Summary

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Official Symbol
zgc:112982provided by ZNC
Official Full Name
zgc:112982provided by ZNC
Primary source
ZFIN:ZDB-GENE-050306-55
See related
Ensembl:ENSDARG00000001829 AllianceGenome:ZFIN:ZDB-GENE-050306-55
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb48h12; fb93h01; wu:fb48h12; wu:fb93h01
Summary
Orthologous to human BCLAF3 (BCLAF1 and THRAP3 family member 3). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs
all
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Genomic context

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See zgc:112982 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (24101807..24118398, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (23956637..23973237, complement)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137489244 Neighboring gene lipase, member Ib Neighboring gene MAP7 domain containing 2b Neighboring gene eukaryotic translation initiation factor 1A X-linked b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein LOC503771

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013349.1 → NP_001013367.1  uncharacterized protein LOC503771 isoform 2

    See identical proteins and their annotated locations for NP_001013367.1

    Status: PREDICTED

    Source sequence(s)
    BC090708
    UniProtKB/TrEMBL
    Q5CZU1
    Related
    ENSDARP00000027078.7, ENSDART00000024606.9
    Conserved Domains (1) summary
    pfam15440
    Location:16 → 49
    THRAP3_BCLAF1; THRAP3/BCLAF1 family

  2. NM_001430902.1 → NP_001417831.1  uncharacterized protein LOC503771 isoform 1

    Status: VALIDATED

    Source sequence(s)
    CT574587
    UniProtKB/TrEMBL
    A0A8M3AVZ8
    Related
    ENSDARP00000101451.3, ENSDART00000111096.5

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    24101807..24118398 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005162696.5 → XP_005162753.1  uncharacterized protein LOC503771 isoform X1

    UniProtKB/TrEMBL
    A0A8M2B9X5
    Conserved Domains (2) summary
    pfam10243
    Location:242 → 412
    MIP-T3; Microtubule-binding protein MIP-T3
    pfam15440
    Location:397 → 492
    THRAP3_BCLAF1; THRAP3/BCLAF1 family

RNA

  1. XR_011008552.1 RNA Sequence

  2. XR_011008553.1 RNA Sequence

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395176.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    135288..154469 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395365.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    135496..154676 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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