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ankrd31 ankyrin repeat domain 31 [ Danio rerio (zebrafish) ]

Gene ID: 550610, updated on 2-Nov-2024

Summary

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Official Symbol
ankrd31provided by ZNC
Official Full Name
ankyrin repeat domain 31provided by ZNC
Primary source
ZFIN:ZDB-GENE-050417-473
See related
Ensembl:ENSDARG00000052731 AllianceGenome:ZFIN:ZDB-GENE-050417-473
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:113046
Summary
Orthologous to human ANKRD31 (ankyrin repeat domain 31). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See ankrd31 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (50998043..51011082)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (50355422..50364489)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene 3-hydroxy-3-methylglutaryl-CoA reductase a Neighboring gene uncharacterized LOC137495632 Neighboring gene glucosaminyl (N-acetyl) transferase 4a Neighboring gene uncharacterized LOC103911115

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Shutdown corner, a large deletion mutant isolated from a haploid mutagenesis screen in zebrafish. Casey MA, et al. G3 (Bethesda), 2022 Mar 4. PMID 35079792, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 31

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017911.1 → NP_001017911.1  ankyrin repeat domain-containing protein 31

    See identical proteins and their annotated locations for NP_001017911.1

    Status: PROVISIONAL

    Source sequence(s)
    BC093592
    UniProtKB/TrEMBL
    Q566E7
    Related
    ENSDARP00000069125.3, ENSDART00000074638.5
    Conserved Domains (3) summary
    cd00204
    Location:1 → 111
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:1 → 87
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:24 → 55
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    50998043..51011082
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068221177.1 → XP_068077278.1  ankyrin repeat domain-containing protein 31 isoform X2

  2. XM_068221176.1 → XP_068077277.1  ankyrin repeat domain-containing protein 31 isoform X1

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394610.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    137530..146666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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