zc3h7bb zinc finger CCCH-type containing 7Bb [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zc3h7bbprovided by ZNC
Official Full Name: zinc finger CCCH-type containing 7Bbprovided by ZNC
Primary source: ZFIN:ZDB-GENE-080208-7
See related: Ensembl:ENSDARG00000055930 AllianceGenome:ZFIN:ZDB-GENE-080208-7
Gene type: protein coding
RefSeq status: MODEL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zc3h7b
Summary: Predicted to enable miRNA binding activity. Predicted to be involved in production of miRNAs involved in gene silencing by miRNA. Orthologous to human ZC3H7B (zinc finger CCCH-type containing 7B). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 12

Exon count:: 22

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	12	NC_007123.7 (19156113..19185837, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	12	NC_007123.6 (19034239..19064040, complement)

Chromosome 12 - NC_007123.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fj28f08.y1 (e-PCR)
- UniSTS:198963

fe49a10.x1 (e-PCR)
- UniSTS:196535

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables miRNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables miRNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in miRNA processing	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: zinc finger CCCH domain-containing protein 7B

Names: zinc finger CCCH-type containing 7B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007123.7 Reference GRCz11 Primary Assembly

Range

19156113..19185837 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021480297.2 → XP_021335972.1 zinc finger CCCH domain-containing protein 7B

UniProtKB/TrEMBL

A0A8M9PX00, E7F4T4

Related

ENSDARP00000127373.1, ENSDART00000153343.2

Conserved Domains (2) summary

sd00006
Location:42 → 78

TPR; TPR repeat [structural motif]

cl26005
Location:42 → 184

PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional

Reference GRCz11 ALT_DRER_TU_2

Genomic

NW_018395301.1 Reference GRCz11 ALT_DRER_TU_2

Range

385048..420818 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_680874.10 → XP_685966.7 zinc finger CCCH domain-containing protein 7B

UniProtKB/TrEMBL

A0A8N7USV6

Conserved Domains (2) summary

sd00006
Location:42 → 78

TPR; TPR repeat [structural motif]

cl26005
Location:42 → 184

PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional