slain1a SLAIN motif family, member 1a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slain1aprovided by ZNC
Official Full Name: SLAIN motif family, member 1aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-7751
See related: Ensembl:ENSDARG00000019185 AllianceGenome:ZFIN:ZDB-GENE-030131-7751
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fj33d03; wu:fj33d03; si:by173d22.3; si:xx-173d22.3; si:ch211-221b16.6
Summary: Predicted to be involved in cytoplasmic microtubule organization; microtubule nucleation; and positive regulation of microtubule polymerization. Predicted to colocalize with microtubule plus-end. Orthologous to human SLAIN1 (SLAIN motif family member 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 9

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	9	NC_007120.7 (17348587..17386730)
105	previous assembly	GRCz10 (GCF_000002035.5)	9	NC_007120.6 (17340853..17379013)

Chromosome 9 - NC_007120.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in cytoplasmic microtubule organization	IBA Inferred from Biological aspect of Ancestor more info
involved_in microtubule nucleation	IBA Inferred from Biological aspect of Ancestor more info
involved_in positive regulation of microtubule polymerization	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
colocalizes_with microtubule plus-end	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: SLAIN motif-containing protein 1; SLAIN motif-containing protein 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001005305.1 → NP_001005305.1 SLAIN motif-containing protein 1a

Status: PROVISIONAL

Source sequence(s)

BX510646

UniProtKB/TrEMBL

A0A8M1N2B7, A8WHU7

Related

ENSDARP00000116385.1, ENSDART00000147488.2

Conserved Domains (1) summary

pfam15301
Location:150 → 609

SLAIN; SLAIN motif-containing family

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007120.7 Reference GRCz11 Primary Assembly

Range

17348587..17386730

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005167972.4 → XP_005168029.1 SLAIN motif-containing protein 1 isoform X2

UniProtKB/TrEMBL

A0A8M2BG17

Conserved Domains (1) summary

pfam15301
Location:150 → 571

SLAIN; SLAIN motif-containing family
XM_005167971.4 → XP_005168028.1 SLAIN motif-containing protein 1 isoform X1

UniProtKB/TrEMBL

A0A8M2BFG7

Conserved Domains (1) summary

pfam15301
Location:150 → 614

SLAIN; SLAIN motif-containing family