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leng9 leukocyte receptor cluster (LRC) member 9 [ Danio rerio (zebrafish) ]

Gene ID: 768155, updated on 2-Nov-2024

Summary

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Official Symbol
leng9provided by ZNC
Official Full Name
leukocyte receptor cluster (LRC) member 9provided by ZNC
Primary source
ZFIN:ZDB-GENE-061013-607
See related
Ensembl:ENSDARG00000062374 AllianceGenome:ZFIN:ZDB-GENE-061013-607
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fi23e07; wu:fi23e07; zgc:154073
Summary
Predicted to enable metal ion binding activity. Orthologous to human LENG9 (leukocyte receptor cluster member 9). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See leng9 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (13809823..13818079, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (13919894..13927935, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene Josephin domain containing 2 Neighboring gene tweety family member 1 Neighboring gene folliculin Neighboring gene zgc:174888

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
leukocyte receptor cluster member 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077298.1 → NP_001070766.1  leukocyte receptor cluster member 9

    See identical proteins and their annotated locations for NP_001070766.1

    Status: PROVISIONAL

    Source sequence(s)
    BC124803
    UniProtKB/TrEMBL
    Q08BA7
    Conserved Domains (3) summary
    smart00356
    Location:29 → 53
    ZnF_C3H1; zinc finger
    pfam04457
    Location:127 → 179
    DUF504; Protein of unknown function (DUF504)
    pfam10469
    Location:350 → 539
    AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    13809823..13818079 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068214016.1 → XP_068070117.1  leukocyte receptor cluster member 9 isoform X1

    Related
    ENSDARP00000113462.1, ENSDART00000144856.3

  2. XM_005157900.5 → XP_005157957.1  leukocyte receptor cluster member 9 isoform X1

    UniProtKB/TrEMBL
    A0A8M2B4R6, F1R3F5
    Conserved Domains (3) summary
    smart00356
    Location:29 → 53
    ZnF_C3H1; zinc finger
    pfam04457
    Location:127 → 179
    DUF504; Protein of unknown function (DUF504)
    pfam10469
    Location:350 → 539
    AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

  3. XM_021466755.2 → XP_021322430.1  leukocyte receptor cluster member 9 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PMM0
    Conserved Domains (2) summary
    pfam04457
    Location:101 → 153
    DUF504; Protein of unknown function (DUF504)
    cl26521
    Location:324 → 513
    AKAP7_NLS; AKAP7 2'5' RNA ligase-like domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394957.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    331518..339555 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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