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map7d1b MAP7 domain containing 1b [ Danio rerio (zebrafish) ]

Gene ID: 796270, updated on 27-Mar-2024

Summary

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Official Symbol
map7d1bprovided by ZNC
Official Full Name
MAP7 domain containing 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-080215-23
See related
Ensembl:ENSDARG00000104701 AllianceGenome:ZFIN:ZDB-GENE-080215-23
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:172238
Summary
Predicted to be involved in microtubule cytoskeleton organization. Predicted to be active in microtubule cytoskeleton. Orthologous to human MAP7D1 (MAP7 domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See map7d1b in Genome Data Viewer
Location:
chromosome: 19
Exon count:
19
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (3929084..4010263, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (3998258..4079437, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene si:ch73-281i18.7 Neighboring gene si:ch73-281i18.6 Neighboring gene uncharacterized LOC100149327 Neighboring gene sperm-tail PG-rich repeat containing 1 Neighboring gene MYST/Esa1-associated factor 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Disruption of MAP7D1 Gene Function Increases the Risk of Doxorubicin-Induced Cardiomyopathy and Heart Failure. Li LP, et al. Biomed Res Int, 2021. PMID 34327238, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in microtubule cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
MAP7 domain containing 1; MAP7 domain-containing protein 1b
Names
microtubule-associated protein 7 domain containing 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001113635.1 → NP_001107107.1  MAP7 domain-containing protein 1b

    See identical proteins and their annotated locations for NP_001107107.1

    Status: PROVISIONAL

    Source sequence(s)
    BC154607
    UniProtKB/TrEMBL
    A8WG76
    Related
    ENSDARP00000136935.1, ENSDART00000159605.2
    Conserved Domains (3) summary
    pfam05672
    Location:462 → 615
    MAP7; MAP7 (E-MAP-115) family
    pfam16496
    Location:315 → 381
    SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
    cl20817
    Location:75 → 187
    GBP_C; Guanylate-binding protein, C-terminal domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    3929084..4010263 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005173747.1 → XP_005173804.1  MAP7 domain containing 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M2BL12
    Conserved Domains (3) summary
    pfam05672
    Location:497 → 650
    MAP7; MAP7 (E-MAP-115) family
    pfam16496
    Location:350 → 416
    SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
    cl20817
    Location:75 → 187
    GBP_C; Guanylate-binding protein, C-terminal domain

  2. XM_005173748.1 → XP_005173805.1  MAP7 domain containing 1 isoform X3

    UniProtKB/TrEMBL
    A0A8M2BL37
    Conserved Domains (3) summary
    pfam05672
    Location:469 → 622
    MAP7; MAP7 (E-MAP-115) family
    pfam16496
    Location:322 → 388
    SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
    cl20817
    Location:94 → 173
    GBP_C; Guanylate-binding protein, C-terminal domain

  3. XM_005173746.1 → XP_005173803.1  MAP7 domain containing 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BL29
    Conserved Domains (3) summary
    pfam05672
    Location:504 → 657
    MAP7; MAP7 (E-MAP-115) family
    pfam16496
    Location:357 → 423
    SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
    cl20817
    Location:94 → 173
    GBP_C; Guanylate-binding protein, C-terminal domain

  4. XM_009293978.3 → XP_009292253.1  MAP7 domain containing 1 isoform X4

    UniProtKB/TrEMBL
    A0A8M3AJX7
    Conserved Domains (3) summary
    pfam05672
    Location:504 → 657
    MAP7; MAP7 (E-MAP-115) family
    pfam16496
    Location:357 → 423
    SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
    cl20817
    Location:94 → 173
    GBP_C; Guanylate-binding protein, C-terminal domain
Nucleotide Protein Strain
Heading Accession and Version

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