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si:dkeyp-98a7.4 si:dkeyp-98a7.4 [ Danio rerio (zebrafish) ]

Gene ID: 798039, updated on 17-Sep-2024

Summary

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Official Symbol
si:dkeyp-98a7.4provided by ZNC
Official Full Name
si:dkeyp-98a7.4provided by ZNC
Primary source
ZFIN:ZDB-GENE-050208-760
See related
Ensembl:ENSDARG00000089525 AllianceGenome:ZFIN:ZDB-GENE-050208-760
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable carbohydrate binding activity. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See si:dkeyp-98a7.4 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (25710148..25711403)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (25690268..25691506)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene si:dkeyp-98a7.5 Neighboring gene novel rhamnose binding lectin-like Neighboring gene si:dkeyp-98a7.7 Neighboring gene si:dkeyp-98a7.8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC171851, MGC172213

General protein information

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Preferred Names
Gal_Lectin domain-containing protein
Names
novel rhamnose binding lectin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110111.4 → NP_001103581.2  Gal_Lectin domain-containing protein precursor

    Status: VALIDATED

    Source sequence(s)
    BX649337
    UniProtKB/TrEMBL
    A0A8M1RL41, Q1LVX1
    Related
    ENSDARP00000125496.1, ENSDART00000150446.2
    Conserved Domains (1) summary
    pfam02140
    Location:42 → 123
    Gal_Lectin; Galactose binding lectin domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    25710148..25711403
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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