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    slain1a SLAIN motif family, member 1a [ Danio rerio (zebrafish) ]

    Gene ID: 560157, updated on 27-Mar-2024

    Summary

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    Official Symbol
    slain1aprovided by ZNC
    Official Full Name
    SLAIN motif family, member 1aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-7751
    See related
    Ensembl:ENSDARG00000019185 AllianceGenome:ZFIN:ZDB-GENE-030131-7751
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj33d03; wu:fj33d03; si:by173d22.3; si:xx-173d22.3; si:ch211-221b16.6
    Summary
    Predicted to be involved in cytoplasmic microtubule organization; microtubule nucleation; and positive regulation of microtubule polymerization. Predicted to colocalize with microtubule plus-end. Orthologous to human SLAIN1 (SLAIN motif family member 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See slain1a in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (17348587..17386730)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (17340853..17379013)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene MYC binding protein 2 Neighboring gene uncharacterized LOC101887044 Neighboring gene sciellin Neighboring gene wu:fc50b12 Neighboring gene finTRIM family, member 53

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in cytoplasmic microtubule organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in microtubule nucleation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in positive regulation of microtubule polymerization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    colocalizes_with microtubule plus-end IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    SLAIN motif-containing protein 1; SLAIN motif-containing protein 1a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001005305.1 → NP_001005305.1  SLAIN motif-containing protein 1a

      Status: PROVISIONAL

      Source sequence(s)
      BX510646
      UniProtKB/TrEMBL
      A0A8M1N2B7, A8WHU7
      Related
      ENSDARP00000116385.1, ENSDART00000147488.2
      Conserved Domains (1) summary
      pfam15301
      Location:150 → 609
      SLAIN; SLAIN motif-containing family

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      17348587..17386730
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005167972.4 → XP_005168029.1  SLAIN motif-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8M2BG17
      Conserved Domains (1) summary
      pfam15301
      Location:150 → 571
      SLAIN; SLAIN motif-containing family

    2. XM_005167971.4 → XP_005168028.1  SLAIN motif-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BFG7
      Conserved Domains (1) summary
      pfam15301
      Location:150 → 614
      SLAIN; SLAIN motif-containing family

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394745.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      543068..580779
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395276.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      211904..249615
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_3

    Genomic

    1. NW_018395383.1 Reference GRCz11 ALT_DRER_TU_3

      Range
      82007..119718
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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