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    RANBP2 RAN binding protein 2 [ Homo sapiens (human) ]

    Gene ID: 5903, updated on 3-Nov-2024

    Summary

    Official Symbol
    RANBP2provided by HGNC
    Official Full Name
    RAN binding protein 2provided by HGNC
    Primary source
    HGNC:HGNC:9848
    See related
    Ensembl:ENSG00000153201 MIM:601181; AllianceGenome:HGNC:9848
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ANE1; TRP1; TRP2; ADANE; IIAE3; NUP358
    Summary
    RAN is a small GTP-binding protein of the RAS superfamily that is associated with the nuclear membrane and is thought to control a variety of cellular functions through its interactions with other proteins. This gene encodes a very large RAN-binding protein that immunolocalizes to the nuclear pore complex. The protein is a giant scaffold and mosaic cyclophilin-related nucleoporin implicated in the Ran-GTPase cycle. The encoded protein directly interacts with the E2 enzyme UBC9 and strongly enhances SUMO1 transfer from UBC9 to the SUMO1 target SP100. These findings place sumoylation at the cytoplasmic filaments of the nuclear pore complex and suggest that, for some substrates, modification and nuclear import are linked events. This gene is partially duplicated in a gene cluster that lies in a hot spot for recombination on chromosome 2q. [provided by RefSeq, Jul 2008]
    Annotation information
    Note: This gene has been reviewed for its involvement in coronavirus biology, and is locus in the vicinity of disease-associated variant(s).
    Expression
    Ubiquitous expression in testis (RPKM 18.7), thyroid (RPKM 17.9) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See RANBP2 in Genome Data Viewer
    Location:
    2q13
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (108719482..109842301)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (109180084..110303989)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (109335938..109402265)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene cytochrome c oxidase subunit 7B, mitochondrial-like Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:109334881-109335811 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:109335812-109336741 Neighboring gene NANOG hESC enhancer GRCh37_chr2:109343044-109343584 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11852 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:109407142-109407316 Neighboring gene ribosomal protein L10 pseudogene 5 Neighboring gene MPRA-validated peak3811 silencer Neighboring gene MPRA-validated peak3812 silencer Neighboring gene coiled-coil domain containing 138 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:109526299-109526800 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:109545693-109546192 Neighboring gene ribosomal protein L39 pseudogene 16 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:109573418-109574617 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:109588237-109589436 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:109589833-109590332 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:109604149-109604650 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:109636621-109637336 Neighboring gene ectodysplasin A receptor Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:109663535-109664035 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:109685726-109686670 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:109705183-109705390 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:109719016-109719749 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11854 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11855 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11856 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11857 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16353 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11858 Neighboring gene SH3RF3 antisense RNA 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:109793904-109794078 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16355 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16354 Neighboring gene microRNA 4265 Neighboring gene SH3 domain containing ring finger 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11859 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16356 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16357 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16358 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16359 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16360 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16361 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:109876451-109876952 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:109876953-109877452 Neighboring gene Sharpr-MPRA regulatory region 14332 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:109891529-109891729 Neighboring gene Sharpr-MPRA regulatory region 6940 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:109933325-109934314 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:109934315-109935303 Neighboring gene small nuclear ribonucleoprotein polypeptide G pseudogene 9 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:109964015-109964260 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16362 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:110012695-110013196 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:110013197-110013696 Neighboring gene microRNA 4266 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:110031578-110032191 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:110032192-110032804 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:110046278-110046841 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:110063255-110063754 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:110065234-110065738 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16363 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16364 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16365 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16366 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:110275114-110275653 Neighboring gene Sharpr-MPRA regulatory region 2497 Neighboring gene MPRA-validated peak3814 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:110352345-110352845 Neighboring gene septin 10 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:110370433-110371342 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11861 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11862 Neighboring gene ribosomal protein L37 pseudogene 12 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11863 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16367 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16368 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:110428681-110429181 Neighboring gene uncharacterized LOC105373545 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:110459765-110460362 Neighboring gene sosondowah ankyrin repeat domain family member C Neighboring gene uncharacterized LOC107985774 Neighboring gene BMS1 pseudogene 19 Neighboring gene uncharacterized LOC100506563 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:110546857-110547358 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:110549157-110549656 Neighboring gene ribosomal protein L22 pseudogene 11 Neighboring gene SRSF3 pseudogene 6 Neighboring gene LIMS3-LOC440895 readthrough Neighboring gene uncharacterized LOC102724848 Neighboring gene 2q13 recombination region Neighboring gene RANBP2 like and GRIP domain containing 5 Neighboring gene uncharacterized LOC105373547 Neighboring gene LIM zinc finger domain containing 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    HIV-1 interactions

    Replication interactions

    Interaction Pubs
    HIV-1 replication, specifically uncoating and nuclear import, requires RANBP2 (NUP358) and KIF5B as shown through siRNA knockdown of each protein PubMed
    shRNA knockdown of RANBP2 renders cells less permissive to HIV-1 WT; HIV-1 is enhanced by RANBP2 [HOWEVER HIV-1 with CA mutations S41A, Q67H, V165I and V172I in combination and/or CA mutation N74D exhibit reduced dependence on RANBP2 for infectivity] PubMed
    Knockdown of RAN binding protein 2 (RANBP2) by siRNA inhibits HIV-1 replication in HeLa-derived TZM-bl cells PubMed
    Knockdown of RAN binding protein 2 (RANBP2) by siRNA inhibits the early stages of HIV-1 replication in 293T cells infected with VSV-G pseudotyped HIV-1 PubMed

    Protein interactions

    Protein Gene Interaction Pubs
    Rev rev SiRNA-mediated depletion of RanBP2 impairs biological activities of ectopically expressed HIV-1 Tat and Rev proteins. RanBP2 depletion also inhibits HIV-1 replication by blocking nuclear import of HIV-1 DNA PIC PubMed
    Tat tat Interaction of HIV-1 Tat with Nup358 in T-cells is identified by a proteomic strategy based on affinity chromatography PubMed
    tat SiRNA-mediated depletion of RanBP2 impairs biological activities of ectopically expressed HIV-1 Tat and Rev proteins. RanBP2 depletion also inhibits HIV-1 replication by blocking nuclear import of HIV-1 DNA PIC PubMed
    capsid gag HIV-1 CA relocalizes RANBP2 (NUP358) into the cytoplasm of infected cells PubMed
    gag NUP358 is involved in HIV-1 nuclear entry and HIV-1 CA protein is the determinant for NUP358-dependent nuclear import PubMed
    gag HIV-1 CA mutants N74D and P90A fail to bind to CPSF6 and cyclophilins (Nup358 and CypA), respectively, and trigger innate sensors, leading to nuclear translocation of NFkappaB and IRF3, production of type 1 IFN and induction of an antiviral state PubMed
    gag HIV-1 CA mutant virus N74D infection is inhibited in the Nup358 null cells, but rescued by Nup358 (1-1340) expression PubMed
    gag Residues N57, M66, Q67, K70, N74, and T107 in the N-terminal domain of HIV-1 CA are important for the binding to CPSF6. Mutations on these residues lead to the loss or reduction of dependency on TNPO3 and RanBP2 PubMed
    gag CypA-CA interactions dictate the use of a NUP358/NUP153 dependent nuclear entry pathway PubMed
    gag The crystal structure of the C-terminal domain (CTD; residues 3062-3224) of NUP358 reveals that the CTD possesses weak peptidyl-prolyl isomerase activity and mediates a weak association with CA. The V3173W mutant abolishes its association with CA PubMed
    gag NUP358 V61M mutation abolishes its interaction with the HIV-1 CA N-terminal domain, while V113F preserves its binding to CA PubMed
    gag NUP358 interacts with HIV-1 CA via its cyclophilin domain (residues 3064-3222). Replacement of HIV-1 CA with SIVmac CA renders HIV-1 largely insensitive to NUP358 depletion PubMed
    integrase gag-pol Depletion of the nuclear transport factor RANBP2 by RNAi blocks HIV-1 nuclear import and integration efficiency as assayed by the appearance of circular viral DNAs, suggesting HIV-1 IN interacts with RANBP2 in cells PubMed

    Go to the HIV-1, Human Interaction Database

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    contributes_to GTPase activator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables SUMO ligase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables SUMO transferase activity EXP
    Inferred from Experiment
    more info
    PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    NOT enables peptidyl-prolyl cis-trans isomerase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein-containing complex binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables small GTPase binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in NLS-bearing protein import into nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in NLS-bearing protein import into nucleus IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in centrosome localization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in mRNA transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in nuclear export EXP
    Inferred from Experiment
    more info
    PubMed 
    involved_in nucleocytoplasmic transport NAS
    Non-traceable Author Statement
    more info
    PubMed 
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in protein peptidyl-prolyl isomerization IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in protein sumoylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in protein sumoylation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in protein sumoylation TAS
    Traceable Author Statement
    more info
     
    involved_in regulation of gluconeogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to amphetamine IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of SUMO ligase complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    located_in annulate lamellae IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasmic periphery of the nuclear pore complex IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol TAS
    Traceable Author Statement
    more info
     
    located_in intracellular membrane-bounded organelle IDA
    Inferred from Direct Assay
    more info
     
    located_in membrane HDA PubMed 
    located_in nuclear envelope IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nuclear envelope TAS
    Traceable Author Statement
    more info
     
    located_in nuclear inclusion body IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nuclear membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of nuclear pore IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of nuclear pore IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of nuclear pore NAS
    Non-traceable Author Statement
    more info
    PubMed 
    part_of nuclear pore cytoplasmic filaments IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of nuclear pore nuclear basket IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
     

    General protein information

    Preferred Names
    E3 SUMO-protein ligase RanBP2
    Names
    358 kDa nucleoporin
    E3 SUMO-protein transferase RanBP2
    P270
    acute necrotizing encephalopathy 1 (autosomal dominant)
    nuclear pore complex protein Nup358
    nucleoporin 358
    nucleoporin Nup358
    ran-binding protein 2
    transformation-related protein 2
    NP_001402800.1
    NP_001402801.1
    NP_001402802.1
    NP_006258.3
    XP_005264059.1
    XP_005264064.1
    XP_011509877.1
    XP_011509878.1
    XP_011509880.1
    XP_016860113.1
    XP_016860114.1
    XP_047301323.1
    XP_054199233.1
    XP_054199234.1
    XP_054199235.1
    XP_054199236.1
    XP_054199237.1
    XP_054199238.1
    XP_054199239.1
    XP_054199240.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_012210.2 RefSeqGene

      Range
      5002..71329
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001415871.1NP_001402800.1  E3 SUMO-protein ligase RanBP2 isoform 2

      Status: REVIEWED

      Source sequence(s)
      AC010095
    2. NM_001415872.1NP_001402801.1  E3 SUMO-protein ligase RanBP2 isoform 3

      Status: REVIEWED

      Source sequence(s)
      AC010095
    3. NM_001415873.1NP_001402802.1  E3 SUMO-protein ligase RanBP2 isoform 4

      Status: REVIEWED

      Source sequence(s)
      AC010095
    4. NM_006267.5NP_006258.3  E3 SUMO-protein ligase RanBP2 isoform 1

      See identical proteins and their annotated locations for NP_006258.3

      Status: REVIEWED

      Source sequence(s)
      AC010095
      Consensus CDS
      CCDS2079.1
      UniProtKB/Swiss-Prot
      P49792, Q13074, Q15280, Q53TE2, Q59FH7
      Related
      ENSP00000283195.6, ENST00000283195.11
      Conserved Domains (12) summary
      smart00028
      Location:6092
      TPR; Tetratricopeptide repeats
      COG5171
      Location:19512143
      YRB1; Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
      cd01926
      Location:30643222
      cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...
      cd13177
      Location:20272143
      RanBD2_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 2
      cd13178
      Location:29253041
      RanBD4_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 4
      cd14684
      Location:11861302
      RanBD1_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 1
      cd14685
      Location:23242440
      RanBD3_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 3
      sd00025
      Location:14191438
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      sd00006
      Location:5989
      TPR; TPR repeat [structural motif]
      pfam00641
      Location:17811809
      zf-RanBP; Zn-finger in Ran binding protein and others
      pfam12185
      Location:27092768
      IR1-M; Nup358/RanBP2 E3 ligase domain
      pfam13414
      Location:59126
      TPR_11; TPR repeat

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      108719482..109842301
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047445367.1XP_047301323.1  E3 SUMO-protein ligase RanBP2 isoform X4

    2. XM_005264002.4XP_005264059.1  E3 SUMO-protein ligase RanBP2 isoform X1

      Conserved Domains (10) summary
      smart00547
      Location:16081632
      ZnF_RBZ; Zinc finger domain
      COG0457
      Location:30126
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      cd01926
      Location:30983256
      cyclophilin_ABH_like; Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding ...
      cd13177
      Location:20272143
      RanBD2_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 2
      cd13178
      Location:29593075
      RanBD4_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 4
      cd14684
      Location:11861302
      RanBD1_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 1
      cd14685
      Location:23242440
      RanBD3_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 3
      TIGR02917
      Location:30291
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00025
      Location:14191438
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      sd00006
      Location:5989
      TPR; TPR repeat [structural motif]
    3. XM_011511576.4XP_011509878.1  E3 SUMO-protein ligase RanBP2 isoform X3

      Conserved Domains (12) summary
      smart00028
      Location:6092
      TPR; Tetratricopeptide repeats
      COG5171
      Location:18922084
      YRB1; Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
      cd01926
      Location:30393197
      cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...
      cd13177
      Location:19682084
      RanBD2_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 2
      cd13178
      Location:29003016
      RanBD4_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 4
      cd14684
      Location:11861302
      RanBD1_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 1
      cd14685
      Location:22652381
      RanBD3_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 3
      sd00025
      Location:14191438
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      sd00006
      Location:5989
      TPR; TPR repeat [structural motif]
      pfam00641
      Location:17221750
      zf-RanBP; Zn-finger in Ran binding protein and others
      pfam12185
      Location:26762732
      IR1-M; Nup358/RanBP2 E3 ligase domain
      pfam13414
      Location:59126
      TPR_11; TPR repeat
    4. XM_005264007.4XP_005264064.1  E3 SUMO-protein ligase RanBP2 isoform X5

      Conserved Domains (9) summary
      smart00028
      Location:6092
      TPR; Tetratricopeptide repeats
      COG5171
      Location:9751167
      YRB1; Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
      cd01926
      Location:21222280
      cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...
      cd13177
      Location:10511167
      RanBD2_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 2
      cd13178
      Location:19832099
      RanBD4_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 4
      cd14685
      Location:13481464
      RanBD3_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 3
      sd00006
      Location:5989
      TPR; TPR repeat [structural motif]
      pfam12185
      Location:17591815
      IR1-M; Nup358/RanBP2 E3 ligase domain
      pfam13414
      Location:59126
      TPR_11; TPR repeat
    5. XM_011511575.3XP_011509877.1  E3 SUMO-protein ligase RanBP2 isoform X2

      Conserved Domains (12) summary
      smart00028
      Location:5991
      TPR; Tetratricopeptide repeats
      COG5171
      Location:19502142
      YRB1; Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
      cd01926
      Location:30973255
      cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...
      cd13177
      Location:20262142
      RanBD2_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 2
      cd13178
      Location:29583074
      RanBD4_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 4
      cd14684
      Location:11851301
      RanBD1_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 1
      cd14685
      Location:23232439
      RanBD3_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 3
      sd00025
      Location:14181437
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      sd00006
      Location:5888
      TPR; TPR repeat [structural motif]
      pfam00641
      Location:17801808
      zf-RanBP; Zn-finger in Ran binding protein and others
      pfam12185
      Location:27342790
      IR1-M; Nup358/RanBP2 E3 ligase domain
      pfam13414
      Location:58125
      TPR_11; TPR repeat
    6. XM_011511578.3XP_011509880.1  E3 SUMO-protein ligase RanBP2 isoform X6

      Conserved Domains (9) summary
      smart00028
      Location:5991
      TPR; Tetratricopeptide repeats
      COG5171
      Location:9741166
      YRB1; Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
      cd01926
      Location:21212279
      cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...
      cd13177
      Location:10501166
      RanBD2_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 2
      cd13178
      Location:19822098
      RanBD4_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 4
      cd14685
      Location:13471463
      RanBD3_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 3
      sd00006
      Location:5888
      TPR; TPR repeat [structural motif]
      pfam12185
      Location:17581814
      IR1-M; Nup358/RanBP2 E3 ligase domain
      pfam13414
      Location:58125
      TPR_11; TPR repeat
    7. XM_017004624.3XP_016860113.1  E3 SUMO-protein ligase RanBP2 isoform X7

    8. XM_017004625.2XP_016860114.1  E3 SUMO-protein ligase RanBP2 isoform X8

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      109180084..110303989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054343261.1XP_054199236.1  E3 SUMO-protein ligase RanBP2 isoform X4

    2. XM_054343258.1XP_054199233.1  E3 SUMO-protein ligase RanBP2 isoform X1

    3. XM_054343260.1XP_054199235.1  E3 SUMO-protein ligase RanBP2 isoform X3

    4. XM_054343262.1XP_054199237.1  E3 SUMO-protein ligase RanBP2 isoform X5

    5. XM_054343259.1XP_054199234.1  E3 SUMO-protein ligase RanBP2 isoform X2

    6. XM_054343263.1XP_054199238.1  E3 SUMO-protein ligase RanBP2 isoform X6

    7. XM_054343264.1XP_054199239.1  E3 SUMO-protein ligase RanBP2 isoform X7

    8. XM_054343265.1XP_054199240.1  E3 SUMO-protein ligase RanBP2 isoform X8