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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_004640.7 → NP_004631.1 spliceosome RNA helicase DDX39B
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript. Both variants 1 and 2 encode the same protein.
- Source sequence(s)
-
BM993499, DA272922, Z37166
- Consensus CDS
-
CCDS4697.1
- UniProtKB/Swiss-Prot
- B0S8C0, O43496, Q0EFA1, Q13838, Q2L6F9, Q53GL9, Q5RJ64, Q5RJ66, Q5ST94, Q5STB4, Q5STB5, Q5STB7, Q5STB8, Q5STU4, Q5STU5, Q5STU6, Q5STU8, Q71V76
- UniProtKB/TrEMBL
- A0A024RCM3, Q5HYT9, Q5RJ68, Q5STU3
- Related
- ENSP00000379475.1, ENST00000396172.6
- Conserved Domains (2) summary
-
- cd18787
Location:262 → 391
- SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
- cd17950
Location:44 → 251
- DEADc_DDX39; DEAD-box helicase domain of DEAD box protein 39
-
NM_080598.6 → NP_542165.1 spliceosome RNA helicase DDX39B
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternative splice site in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode the same protein.
- Source sequence(s)
-
AL662801, BC000361, BM993499, DA272922
- Consensus CDS
-
CCDS4697.1
- UniProtKB/Swiss-Prot
- B0S8C0, O43496, Q0EFA1, Q13838, Q2L6F9, Q53GL9, Q5RJ64, Q5RJ66, Q5ST94, Q5STB4, Q5STB5, Q5STB7, Q5STB8, Q5STU4, Q5STU5, Q5STU6, Q5STU8, Q71V76
- UniProtKB/TrEMBL
- A0A024RCM3, Q5HYT9, Q5RJ68, Q5STU3
- Related
- ENSP00000416269.1, ENST00000458640.5
- Conserved Domains (2) summary
-
- cd18787
Location:262 → 391
- SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
- cd17950
Location:44 → 251
- DEADc_DDX39; DEAD-box helicase domain of DEAD box protein 39
RNA
-
NR_037852.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks two internal exons, compared to variant 1. This variant is represented as non-coding because the use of the supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AK298194, BM993499, DA272922
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000006.12 Reference GRCh38.p14 Primary Assembly
- Range
-
31530226..31542003 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_1
Genomic
-
NT_167244.2 Reference GRCh38.p14 ALT_REF_LOCI_1
- Range
-
2862775..2871733 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_2
Genomic
-
NT_113891.3 Reference GRCh38.p14 ALT_REF_LOCI_2
- Range
-
3007559..3019331 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_3
Genomic
-
NT_167245.2 Reference GRCh38.p14 ALT_REF_LOCI_3
- Range
-
2777999..2789773 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_4
Genomic
-
NT_167246.2 Reference GRCh38.p14 ALT_REF_LOCI_4
- Range
-
2835299..2847056 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_5
Genomic
-
NT_167247.2 Reference GRCh38.p14 ALT_REF_LOCI_5
- Range
-
2872169..2883942 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_6
Genomic
-
NT_167248.2 Reference GRCh38.p14 ALT_REF_LOCI_6
- Range
-
2786088..2797859 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 ALT_REF_LOCI_7
Genomic
-
NT_167249.2 Reference GRCh38.p14 ALT_REF_LOCI_7
- Range
-
2829510..2841287 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060930.1 Alternate T2T-CHM13v2.0
- Range
-
31383322..31395095 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)