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    btbd10b BTB (POZ) domain containing 10b [ Danio rerio (zebrafish) ]

    Gene ID: 557247, updated on 2-Nov-2024

    Summary

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    Official Symbol
    btbd10bprovided by ZNC
    Official Full Name
    BTB (POZ) domain containing 10bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080104-5
    See related
    Ensembl:ENSDARG00000020252 AllianceGenome:ZFIN:ZDB-GENE-080104-5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    id:ibd2027
    Summary
    Predicted to be involved in phosphatidylinositol 3-kinase/protein kinase B signal transduction. Predicted to be active in cytoplasm. Is expressed in somite. Orthologous to human BTBD10 (BTB domain containing 10). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See btbd10b in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (66112196..66133748, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (65888546..65910107, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101883932 Neighboring gene basic helix-loop-helix ARNT like 1b Neighboring gene parathyroid hormone 1b Neighboring gene uncharacterized LOC108190816

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Automated identification of conserved synteny after whole-genome duplication. Catchen JM, et al. Genome Res, 2009 Aug. PMID 19465509, Free PMC Article
    2. Impact of selenium co-administration on methylmercury exposed eleutheroembryos and adult zebrafish (Danio rerio): Changes in bioaccumulation and gene expression. Cabezas-Sanchez P, et al. Chemosphere, 2019 Dec. PMID 31319311
    3. Comparative genomic analysis of teleost fish bmal genes. Wang H. Genetica, 2009 May. PMID 18850331
    4. Molecular evolution and functional divergence of zebrafish (Danio rerio) cryptochrome genes. Liu C, et al. Sci Rep, 2015 Jan 29. PMID 25630924, Free PMC Article
    5. A gene expression screen in zebrafish embryogenesis. Kudoh T, et al. Genome Res, 2001 Dec. PMID 11731487

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in phosphatidylinositol 3-kinase/protein kinase B signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      66112196..66133748 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_682338.9 → XP_687430.2  BTB/POZ domain-containing protein 10

      UniProtKB/TrEMBL
      A0A8N7TCZ2, X1WDG9
      Related
      ENSDARP00000128268.1, ENSDART00000154961.2
      Conserved Domains (2) summary
      smart00225
      Location:121 → 209
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam16017
      Location:153 → 382
      BTB_3; BTB/POZ domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394713.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      247159..267716 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021472027.2 → XP_021327702.1  BTB/POZ domain-containing protein 10

      UniProtKB/TrEMBL
      A0A8M9P9S6
      Conserved Domains (1) summary
      pfam16017
      Location:119 → 224
      BTB_3; BTB/POZ domain
    Nucleotide Protein Strain
    Heading Accession and Version

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